Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1290 ATGGCTGACACTTCTTTCTTTTTCACACATTTTCCTGAACACTTTCAGGAGAGAGACTTATGGAGGGTTTTTCAAAGGTGGGGAAGGGTGCTGGATGTTTTTGTTTCAAGAAAGCTCAATGCAAGGAATCAAAAGTTTGGGTTCGTAAGGTTTCAGGGAGTGAATGACGTTGTATCTCTGGAAAGAGAGTTGGACTCAATATGGATTGGTACATGGAAGATGCAGGTAAATCTTCCAAAGTACCAGAGGGCGGAGGGTACAAGGGTGCAAAGAAATGAGGGCTCTGGGACGAACTGGAATCGGGGTCGGACGGAGCAGCAACAGTCGTTTGCTCAAGTTGTTTCGGGGGAGGTAGCTCAGAGCGGGACTGGAGGGAATGCAGGTGGCGCACAGGGAGAAGAGGTTACTGAACTGACGGTGGTTTTAGAGTCTCCTTCATGGCTCGAAGGTTGTTATGTGGGTAGCCTTAAGGTGGTGTCTTGCATGCAGGCGTTGAAAGAGTGCTTTGTCTTGGGTGGCTTTAGTCATGTCAGTATAAGGCAGCTTGGGGAAAGTTACGTGTTGCTGTCATGTGATGAAGGTGAAGGATTGAGTAAGATTTTAACTGAAAATAAAGCCTGGTTTGATGAAATGTTCTTGACGGTTGCACCTTGGGATGAGTCCTTTGCAGTGAAGGAGAGATCAATGTGGCTTCGGTGCAGAGGCATCCTGCTTCAAATGTGGTGCGATCAGTGCTTTTTCAGGGTAGGGGAGTTGGTAGGGGAGGTGGTGGAGATAGATGAAGCAACAAAAAAGAAAGAAAAGTTGGAATACGTGCGTACACGGGTCCTCAGCATCAATGGAGTTTCGTGCACGGTGTCGTTTGAAGAAGAGGCAAGTTTCCCGGATTTTTTCCACAAGACGGTTAGCGGTAATTGGGATGGAGGAGGCTCGAAGGTGGATACAGAGGCAAGCTCGGAGGAGGGAAGTGTAGGAGCAATCTTAGGCGTTTCGGCGGAATCCGAGTTCGAAGCGGTTGGAGGAGGGAAGTGTAGGAGCAAGCTTAGGCGTTTCGGCGGAATCCGAGTTCGAAGCGGTTGGATGAGGGGAGGTAGGGTACGCAAGCAAGGTGAAGGAGTGCCTTTTCAAGATGCTTTAAGTGGTGCTTTAATGGAGAACGATTTTCTAGGAGCAAAGGTGGGAAGCGTGAGTTCACCTTTAATGTCTGATGCATGTATTCCCAATAAGTCCAAGGCAACTTCAGATTGGGGTAGGAGGAGCATTGATGAAGGAAGCTCATGCATTGGTGAGCGCGGGTTACGAAGTGTAGAAGAGGAGTTATTAGGGAGTAGTTCCGAAAAGGGTGGAGTGGGTTCCAACGTGGAGGGGAGGCATTCTAGGGGTATTGCAGGCCGTGGGTCCCTTAGGATGTTGGAAGGAGTTAATGGGGTAGGCGCGGAAATCTGCAATGTGAGTGGGAAGGATTTTGGGTGGGATTCTTACGTGGAGGTAGGCCCACAACATGCTTTAATTAAAGAGGTAGGTGGAAAAGTATTGGAAGGTTGCAAAGATGCAGATTACGTGGAGGTAGGCCCACAACAGGCTTTAATTAAAGAGGTAGGTGGAAAAGAATTGGAAGGTTGCAAAGATGCGGATACCGAGGCTCTTGCAAAAGGCTTTTTGCTGGAACATTTGGGAAGTAAGAGTTGGGTTGGAGAATCAATAAGGCCCGGAATCTCTTTGGAGGTTTCGGAATTAGCAGGAGTAAGGGTGGATGAAGAGGGCGAGGACGAGATACCATTTTTAAACAGAAATGAAGAAAGCCACGGTTTG 1812 0.4823 MADTSFFFTHFPEHFQERDLWRVFQRWGRVLDVFVSRKLNARNQKFGFVRFQGVNDVVSLERELDSIWIGTWKMQVNLPKYQRAEGTRVQRNEGSGTNWNRGRTEQQQSFAQVVSGEVAQSGTGGNAGGAQGEEVTELTVVLESPSWLEGCYVGSLKVVSCMQALKECFVLGGFSHVSIRQLGESYVLLSCDEGEGLSKILTENKAWFDEMFLTVAPWDESFAVKERSMWLRCRGILLQMWCDQCFFRVGELVGEVVEIDEATKKKEKLEYVRTRVLSINGVSCTVSFEEEASFPDFFHKTVSGNWDGGGSKVDTEASSEEGSVGAILGVSAESEFEAVGGGKCRSKLRRFGGIRVRSGWMRGGRVRKQGEGVPFQDALSGALMENDFLGAKVGSVSSPLMSDACIPNKSKATSDWGRRSIDEGSSCIGERGLRSVEEELLGSSSEKGGVGSNVEGRHSRGIAGRGSLRMLEGVNGVGAEICNVSGKDFGWDSYVEVGPQHALIKEVGGKVLEGCKDADYVEVGPQQALIKEVGGKELEGCKDADTEALAKGFLLEHLGSKSWVGESIRPGISLEVSELAGVRVDEEGEDEIPFLNRNEESHGL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1290 604 Pfam Domain of unknown function (DUF4283) 176 276 IPR025558 -
Pvu11g1290 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 57 IPR000504 GO:0003723
Pvu11g1290 604 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 433 - -
Pvu11g1290 604 CDD RRM_SF 7 77 - -
Pvu11g1290 604 SUPERFAMILY RNA-binding domain, RBD 6 100 IPR035979 GO:0003676
Pvu11g1290 604 PANTHER RNA RECOGNITION MOTIF 5 433 - -
Pvu11g1290 604 SMART rrm1_1 5 77 IPR000504 GO:0003723
Pvu11g1290 604 Gene3D - 2 127 IPR012677 -
Pvu11g1290 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1290 Pvu-Chr11 26711063 26713033 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1290 - - pvu:PHAVU_011G125000g 1175.61