Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1230 ATGGATTCTTATTCTTCACATTCAGCTACCACCACCCCTCACCACCACCACCGTCACCACCACCGTTCTTCTGATCGGAGCAGATCTCGAACCTCTTCCACCTTGGCTCGCATCGGTGAAAATGGAATTATAGAGCCTATTCGCATATCTCTCGACCTGGTTCCTTCACCAACCACCATCAAACTCCCATCACCATCATTATCATCGCGTTCACCTCTCTCCCTTCTGCGTTCTCCTAACTCCTGTCTCCCACTCCGGGAGCTTCTCCTCATGTCTCCTTCTCCGGCGAGGAAGTCCAAGCCACGGTTCGACGATGAGCTCCTGGAGGCAGGTTCCGGTGTTCGCCGCCGGTGTAAGAGCCGAGGGGCGCAGATGGGGTTGCTCTGTTCGCCCAGGAGCTCGCGGAGGTCGAGGCGGGAAGAGAAGGAGGTTGGGTTGGTGGTGGATGAGGCTGGAAAACAGAGGAAGAGGAGGCACAGTGGAAGACCCAGAAAGGAAAAACTCAGCTTGGTCCCTTTTCAACCACCTTCAATTTCTTCGTCTCCTCCAAAATCTGAAGAAGAAACTGGAGGTGATTTAGATCGTGTTGGACAATTCATTACTGATTTAATCATGTGGAGAGATGTGTCAAAATCAGCCTTTTGGTTTGGGTTTGGGTCTCTTTGTTTCTTGTCTTCTTTCTTCACTAAAGGAGTCAACTTCAGCATCTTCTCTGCCTTATGTCAGTTGGCAATTCTCTTGTTGGCTTTTTCATTCTTCTCAAATTCAGTTTCTCAAAGAGACCAGGCTGAGAAGGGTTATGCCAAGCTGAAAGAAGATGACATTTTACGTCTCACAAACTTGATTCTTCCTGCTTTCAATCTTGCAATTTCAAAAACCAGAGAGCTGTTCTCAGGAGAACCATCCATTACCCTGAAACTAGCTCCTTTCCTTCTACTAGGAGCTGAATATGGCTCTCTTATTACAATTTGGAGACTCAGTGCCATTGGATTTTTTGTCAGCTTCAGTGTACCAAAGCTTTATTCTTGCTACTCTGATCAGATCAACCAGCGAGCTAAGTGCTTGAAGCTGAGATTGTTGGATAGATGGAGCGCCTGCCCTCACAAGAAGATAGTGGTCGCATCAGCACTTATTGCCTTTTGGAAATTATCTACTATAAAGACTCGAATCTTCACAGGATTTATACTGCTTGTAATAGCCAGATATTGTCGGCAAAATGTCATGCAACAAGTAGAAGATGGAGAAGCACAACTGGGAGAGAAGGGACAAAAATAG 1275 0.4667 MDSYSSHSATTTPHHHHRHHHRSSDRSRSRTSSTLARIGENGIIEPIRISLDLVPSPTTIKLPSPSLSSRSPLSLLRSPNSCLPLRELLLMSPSPARKSKPRFDDELLEAGSGVRRRCKSRGAQMGLLCSPRSSRRSRREEKEVGLVVDEAGKQRKRRHSGRPRKEKLSLVPFQPPSISSSPPKSEEETGGDLDRVGQFITDLIMWRDVSKSAFWFGFGSLCFLSSFFTKGVNFSIFSALCQLAILLLAFSFFSNSVSQRDQAEKGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLGAEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVASALIAFWKLSTIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLGEKGQK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1230 424 ProSiteProfiles Reticulon domain profile. 200 350 IPR003388 -
Lja3g1230 424 MobiDBLite consensus disorder prediction 125 192 - -
Lja3g1230 424 MobiDBLite consensus disorder prediction 57 75 - -
Lja3g1230 424 MobiDBLite consensus disorder prediction 133 156 - -
Lja3g1230 424 MobiDBLite consensus disorder prediction 11 26 - -
Lja3g1230 424 PANTHER RETICULON-LIKE PROTEIN B17 13 415 - -
Lja3g1230 424 PANTHER RETICULON-LIKE PROTEIN B17 13 415 IPR044647 -
Lja3g1230 424 Pfam Reticulon 201 353 IPR003388 -
Lja3g1230 424 MobiDBLite consensus disorder prediction 56 75 - -
Lja3g1230 424 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1230 Lja-Chr3 12928140 12931454 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1230 - - gmx:100799069 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1230 3 12928140 12931454 Lja3g1230 3 12928140 12931454 ECH