Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00269 AtggattcttcttcttcatcctctGATTCTCGATTCATCTACGACGTGTTCATCAGTTTTAGAGGACAAGACACTCGCCAGTCTTTTGTTTCTCATCTCCATGCTGCCTTCTCAAATGCCAGAATCAACACTTTCGTCGACAACAAACTAATTCTCAAGGGAGCCGAACTTGGATCAGAACTATTGGGACTCCAAAAACTACCACGAGCAATAGAAAAGTCTCGTATATCAATAGTTGTTTTCTCCAAAAACTACACAGAATCTATTTGGTGTCTCAACGAGCTTGAAAAAATTATGGAATGCCGCACAAATCATGGCCAAGTCGTTATACCAGTGTTTTACGACGTTCCTCCATCGGTTGTCCGTCTTCAACAGGGTGCTTTTGGAAAATCATTACAAGAAACTGCGGAAAATAGATACTTAGATAGAGAACTGAGGGAAAATGTTTTGTCTAGTTGGAGGACGGCACTCACTGAAGCTGCTAATTTTTCTGGTTGGGATGTCACCAATTACAGGTAG 519 0.395 MDSSSSSSDSRFIYDVFISFRGQDTRQSFVSHLHAAFSNARINTFVDNKLILKGAELGSELLGLQKLPRAIEKSRISIVVFSKNYTESIWCLNELEKIMECRTNHGQVVIPVFYDVPPSVVRLQQGAFGKSLQETAENRYLDRELRENVLSSWRTALTEAANFSGWDVTNYR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00269 172 Pfam TIR domain 14 161 IPR000157 GO:0007165
Tsu08g00269 172 PANTHER TOLL/INTERLEUKIN-1 RECEPTOR-LIKE PROTEIN 1 171 - -
Tsu08g00269 172 ProSiteProfiles TIR domain profile. 12 172 IPR000157 GO:0007165
Tsu08g00269 172 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 166 IPR035897 -
Tsu08g00269 172 Gene3D - 8 172 IPR035897 -
Tsu08g00269 172 PANTHER TMV RESISTANCE PROTEIN N-LIKE 1 171 - -
Tsu08g00269 172 SMART till_3 13 163 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00269 Tsu-Chr8 2363180 2363698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00269 16 139 Miscellaneous Gene Families AT4G19920 41.129 8.20e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00269 - - cam:101511388 204.912