Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g0905
Pvu10g0290 . . . . . Ahy12g1937 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3281 . . . . . . . . . . . . . . . . . . . . . Vimu9g01443 . Vivi7g03922 .
Pvu10g0291 . . . . . Ahy12g1942 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vra9g1110
Pvu10g0292 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0294 . . . . . . . Aip02g02183 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0295 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0296 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g0302 . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0297 . . Adu09g00581 . . . . Aip02g02181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g0303 . . . . . . . . . . . . . . . . . . . .
Pvu10g0298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g3279 . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0289 Chr10 4069147 4073022 +
Vra Vra9g0905 Chr9 10852032 10859708 +
Pvu Pvu10g0290 Chr10 4073759 4075915 -
Ahy Ahy12g1937 Chr12 101153551 101161741 -
Lja Lja3g3281 Chr3 64130855 64139260 +
Vimu Vimu9g01443 Chr9 23085485 23085925 +
Vivi Vivi7g03922 Chr7 105223076 105223848 +
Pvu Pvu10g0291 Chr10 4076091 4078412 -
Ahy Ahy12g1942 Chr12 101233242 101243145 -
Vra Vra9g1110 Chr9 14280436 14284903 +
Pvu Pvu10g0292 Chr10 4080585 4084830 -
Pvu Pvu10g0293 Chr10 4090392 4094611 -
Pvu Pvu10g0294 Chr10 4103114 4106897 -
Aip Aip02g02183 Chr02 92177619 92226973 -
Pvu Pvu10g0295 Chr10 4120276 4127007 +
Pvu Pvu10g0296 Chr10 4139870 4143592 +
Mal Mal5g0302 Chr5 4962673 4965995 +
Pvu Pvu10g0297 Chr10 4150952 4152458 +
Adu Adu09g00581 Chr09 7380189 7391144 +
Aip Aip02g02181 Chr02 92071825 92154484 -
Mtr Mtr8g0303 Chr8 3319741 3325796 -
Pvu Pvu10g0298 Chr10 4155918 4158626 +
Lja Lja3g3279 Chr3 64098359 64105857 +