Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0306 ATGGAATCGTCATCTTCATCATCAAATCTGCCACGGATGTACGATGTGCTTATCAACTTTAATGGAGAAGACATCCAAAGGAGATTTGTTTCTCATCTCGATTCTGCACTCTCTGCTGTTGGCTTCACCACTTTCCTTCACCACCCCAATGCAGTGAACCCAACGCACATCCAACAACCTATTCTCAATCTCTGTCGGGTAGCAATTGTTGTTTTTACCAAATCCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCAACAAATCATCAAATGGCACCAAACTTATAGCCGACATGTTCTGCCCGTTTATTACGAAATTCACCCATCTCATGTACGTCTTCAAAAGGGTGATTTTGGAAAAGCCTTCAAAGCAACTGCACAACAAACATTCTCAGGACAACAACTGGAGCATGGCATGTCCAGATGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAG 485 0.4309 MESSSSSSNLPRMYDVLINFNGEDIQRRFVSHLDSALSAVGFTTFLHHPNAVNPTHIQQPILNLCRVAIVVFTKSYSQSAWCLNQLQQIIKWHQTYSRHVLPVYYEIHPSHVRLQKGDFGKAFKATAQQTFSGQQLEHGMSRWSHALTKAANFFGWDESNY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0306 161 Gene3D - 11 161 IPR035897 -
Pvu10g0306 161 Pfam TIR domain 14 149 IPR000157 GO:0007165
Pvu10g0306 161 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 156 IPR035897 -
Pvu10g0306 161 PANTHER TMV RESISTANCE PROTEIN N-LIKE 1 158 - -
Pvu10g0306 161 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 1 158 - -
Pvu10g0306 161 SMART till_3 13 153 IPR000157 GO:0007165
Pvu10g0306 161 ProSiteProfiles TIR domain profile. 12 161 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0306 Pvu-Chr10 4290078 4297923 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0306 11 157 Miscellaneous Gene Families AT1G57830 31.544 2.12e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0306 - - pvu:PHAVU_010G027500g 312.768