Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa4g4813 | ATGGGAAAAATTCCTCCTTCATTTCGTTCCGCACTCTCAAACCCAAACCTAATCAACCGATCTTCACTCCTTCCATCTTCTTCCAAACCCCGCCATTTCCCCAACAAAACCCCCTCCAATTTCACCGCTAAATCCCGAAAACCACAACCACAACAACCACAACCTCCGAAACCCTTATCCCCATTCAAATCCCCAAGCCTCCAGGACGCTAAAACCGTTTTCAATTCCATCGTTAATACCTCTAATGCCCCCAATGATTTCCGCTTCCATAATTCCCTTCTTCAATCCTACGCTTCAATTTCCACCATTAACGATTCCATCGCTTTTCTCCGTCACATGACAAAGACTCACCCTTTATTCTCCCCTGAGAAATCCACTTACCACATCCTGCTTACCCAATCCTGCAAATCCGATGATCCCACTCTTGCCCCAATTCATCAAACCCTAAATTTGATGGTTTCTGATGGTGTAAACCCTGATAAAGTTACTGTTGATTTAGCGGTTCGGTCGCTATGTTCGGCTGGTCGTGTAGATGACGCGGTTGAGTTGATTAAAGAGTTGTCTTTGAAGCATTGTGTACCTGACATTTACACTTTCAATTTCCTTGTTAAGAATCTATGTAAGTGCCGCACGTTGAGCTCTGTCTATAGTTTTATTGAAGAAATGCGTAGTAAATTTGATGTGAAGCCTGATCTTGTTACTTACACGATTCTGATTGATAATGTTTGTAACACTAAGAATTTGCGCGAGGCTATGAGGTTGGTGAAGGTTCTCCATGAGGAAGGTTTTAAGCCAGATTGCTTTGTTTACAATACAATTATGAAAGGTTATTGTATGCTGAGTAGAGGGAGTGAGGCGATTGAGGTTTATAATCAAATGAAGGAGAATGGTGTGGAGCCTGATCTTATCACTTATAATACATTGATTTATGGTTTATCGAAATCCGGTAGGGTCACGGAAGCGAAGAAGTTGTTGCGTGTTATGGCGGAAAAGGGTCATTTTCCTGATGAGGTGACTTATACGTCTCTGATGAATGGGATGTGCAGGAAAGGTGAGACCTTGGCTGCATTGGCATTGTTGGAAGAGATGGAAATGAAGGGCTGCAGTCCGAATTCGTGCACGTATAACACGCTGCTTCACGGGTTGTGTAAGTCTAGGCTGTTTGATAAGGCCATGGAGTTGTATGAAATGATGAAATCGGATGGTCTGAAGCTTGATATGGCTTCTTATGCTACGTTTGTCAGGTCATTATGTAGAGTTGGTAGAATTGCGGATGCTTATGAAGTATTTGATTATGCAGTCGGAAGCAAGAGTTTGACAGACGTTGCTGCTTACACAACATTGGAGAGCACACTTAAATGGTTCAAGAAAGCAAAAGAAGAAGGCCTTAAAGTTTAA | 1398 | 0.4242 | MGKIPPSFRSALSNPNLINRSSLLPSSSKPRHFPNKTPSNFTAKSRKPQPQQPQPPKPLSPFKSPSLQDAKTVFNSIVNTSNAPNDFRFHNSLLQSYASISTINDSIAFLRHMTKTHPLFSPEKSTYHILLTQSCKSDDPTLAPIHQTLNLMVSDGVNPDKVTVDLAVRSLCSAGRVDDAVELIKELSLKHCVPDIYTFNFLVKNLCKCRTLSSVYSFIEEMRSKFDVKPDLVTYTILIDNVCNTKNLREAMRLVKVLHEEGFKPDCFVYNTIMKGYCMLSRGSEAIEVYNQMKENGVEPDLITYNTLIYGLSKSGRVTEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNSCTYNTLLHGLCKSRLFDKAMELYEMMKSDGLKLDMASYATFVRSLCRVGRIADAYEVFDYAVGSKSLTDVAAYTTLESTLKWFKKAKEEGLKV* | 466 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa4g4813 | 465 | MobiDBLite | consensus disorder prediction | 9 | 48 | - | - | |
| Psa4g4813 | 465 | Pfam | PPR repeat family | 230 | 278 | IPR002885 | - | |
| Psa4g4813 | 465 | Pfam | PPR repeat family | 160 | 208 | IPR002885 | - | |
| Psa4g4813 | 465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 231 | 265 | IPR002885 | - | |
| Psa4g4813 | 465 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
| Psa4g4813 | 465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 371 | 405 | IPR002885 | - | |
| Psa4g4813 | 465 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 1 | 464 | - | - | |
| Psa4g4813 | 465 | SUPERFAMILY | HCP-like | 245 | 431 | - | - | |
| Psa4g4813 | 465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 336 | 370 | IPR002885 | - | |
| Psa4g4813 | 465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 266 | 300 | IPR002885 | - | |
| Psa4g4813 | 465 | TIGRFAM | PPR: pentatricopeptide repeat domain | 338 | 372 | IPR002885 | - | |
| Psa4g4813 | 465 | TIGRFAM | PPR: pentatricopeptide repeat domain | 233 | 267 | IPR002885 | - | |
| Psa4g4813 | 465 | TIGRFAM | PPR: pentatricopeptide repeat domain | 168 | 196 | IPR002885 | - | |
| Psa4g4813 | 465 | TIGRFAM | PPR: pentatricopeptide repeat domain | 269 | 301 | IPR002885 | - | |
| Psa4g4813 | 465 | TIGRFAM | PPR: pentatricopeptide repeat domain | 409 | 431 | IPR002885 | - | |
| Psa4g4813 | 465 | TIGRFAM | PPR: pentatricopeptide repeat domain | 303 | 337 | IPR002885 | - | |
| Psa4g4813 | 465 | TIGRFAM | PPR: pentatricopeptide repeat domain | 373 | 406 | IPR002885 | - | |
| Psa4g4813 | 465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Psa4g4813 | 465 | Gene3D | Tetratricopeptide repeat domain | 222 | 351 | IPR011990 | GO:0005515 | |
| Psa4g4813 | 465 | Gene3D | Tetratricopeptide repeat domain | 62 | 221 | IPR011990 | GO:0005515 | |
| Psa4g4813 | 465 | Gene3D | Tetratricopeptide repeat domain | 352 | 461 | IPR011990 | GO:0005515 | |
| Psa4g4813 | 465 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 1 | 464 | - | - | |
| Psa4g4813 | 465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 301 | 335 | IPR002885 | - | |
| Psa4g4813 | 465 | Pfam | Pentacotripeptide-repeat region of PRORP | 285 | 456 | IPR033443 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa4g4813 | 84 | 460 | Glycosyltransferase | AT1G05670 | 28.382 | 2.20e-41 | 155 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa4g4813 | - | - | adu:107458955 | 690.649 |