LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo1g04477	ATGTATATGCAACCTCCTCGATCGAAACCCCAAAGCCAATGGATATACGATGTGTTCATCAATTTCAGGGGAGCAGACACTCGTGGCAACTTCGTTTCTCACCTCTATGCTGCTCTCACAAATGCTGGAATCAACACTTTTCTTGACGATGAGAATCTTGAAAAGGGAAAGGTGCTGGGACCAGAATTAATGCGAGCAATAGAAGGTTCTCAGATAGCCATCGTTGTTTTCTCCGAGAATTACGTTCGTTCTGGTTGGTGTCTTGACGAACTGGGAACAAAAGCCATCGAGGGATTGGTTATGAAGTTGCCAAAGACCAATAGAGTTTGCTTTGATACAATTGCTTTTGAGAAAATGAATAGATTGAGATTGTTGCAACTTGATAATGTACAAGTCATCGGAGATTACAAGTGTTTTCCAAAGCACCTGAAATGGCTTTCTTGGCAAGGATTTCCATTAAAATACACACCAGAAAACTTTTATCAGAAAAATGTAGTTGCTATGGACTTAAAACACAGTAATCTCACACAAGTTTGGAAGAAGCCTCAGGGATTGGCAACCAATTCTGGTGATTCATTCCTTCCGGGTGACAATTACCCTTCTTGGTTAGCCTATAGAGGTGAAGGACCTTCTGTACTATTTCAAGTTCCGGAGGATACCAATTACTGCATGAAGGGAATGACTTTATGTGTTCTTTATTCATCAACACCTGAAAATCTGGCAACTGAATGTCTCACTAGTGTTATGATCATTAATTACACAAAATTCACTATCCATATTTACAAACGAGACACAATAATGTCGTTTAATGATGAAGATTGGCAAGGCGTGGTATCAAATTTAGGAGCTGGTGACAACGTGGAGATTTTTGTAGCTATTGGGCATGGATTGACCGTTAAGGAAACTGCTATCTATCTAATATATGATCAGTCTAATGCTACGGAAGTTGAGCCATTAACTAGCACAAAGATTGAGCCATTACGTGAAGTGGAAGTGCAACCATCACGTAGTGTGAAAACAGAGGCATCAGCTGAAGAGGATGTACAATCATCACCTAATGTGAAAACAGAGTCATCATCTGAAGAACCATCACCTGATGTGAAAATGGAACCATCACTTGTTGTCAGTAATGAACCATCACCGAAGAAAAATATAAAAATCTTTACAAGACTTGCAAAGAGAGTGGGAGAATGTTTATGCTTGAACCAGAATTGA	1215	0.3959	MYMQPPRSKPQSQWIYDVFINFRGADTRGNFVSHLYAALTNAGINTFLDDENLEKGKVLGPELMRAIEGSQIAIVVFSENYVRSGWCLDELGTKAIEGLVMKLPKTNRVCFDTIAFEKMNRLRLLQLDNVQVIGDYKCFPKHLKWLSWQGFPLKYTPENFYQKNVVAMDLKHSNLTQVWKKPQGLATNSGDSFLPGDNYPSWLAYRGEGPSVLFQVPEDTNYCMKGMTLCVLYSSTPENLATECLTSVMIINYTKFTIHIYKRDTIMSFNDEDWQGVVSNLGAGDNVEIFVAIGHGLTVKETAIYLIYDQSNATEVEPLTSTKIEPLREVEVQPSRSVKTEASAEEDVQSSPNVKTESSSEEPSPDVKMEPSLVVSNEPSPKKNIKIFTRLAKRVGECLCLNQN	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo1g04477	404	Gene3D	-	9	102	IPR035897	-
	Mepo1g04477	404	MobiDBLite	consensus disorder prediction	330	380	-	-
	Mepo1g04477	404	Pfam	TIR domain	16	91	IPR000157	GO:0007165
	Mepo1g04477	404	SMART	till_3	15	131	IPR000157	GO:0007165
	Mepo1g04477	404	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	91	IPR044974	GO:0006952
	Mepo1g04477	404	ProSiteProfiles	TIR domain profile.	14	174	IPR000157	GO:0007165
	Mepo1g04477	404	MobiDBLite	consensus disorder prediction	344	360	-	-
	Mepo1g04477	404	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	92	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo1g04477	Mepo-Chr1	52554604	52560405	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo1g04477	18	93	Miscellaneous Gene Families	AT5G44920	51.316	3.10e-15	73.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo1g04477	-		-	mtr:11423959	320.857