Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g4754 ATGTCTTCGTCTTCTTCATATACCAATCCACAATGGCTCTACGACGTGTTCCTCAGCTTTAGAGGGAAAGATACACGCAGCAACTTCATTTCTCATCTACATGCAGCCCTCTCAAATGCAGGAATCAACGCATTTGTCGACTACAAACTTCACAAAGGAACAGATTTGGGACCAGAACTATTGGGAGCAATAGAAAAGTCTCATATATCTATCATTGTTTTCTCCAAAAACTATATTGAGTCTACTTGGTGTCTCAACGAGCTTGAAAAAATCATGGAATGCCGAAGAACACATGGACACGTGGTTATGCCCGTGTTTTACGACGTTGATCCGTCGGTTTTGCGTCACCAACATGGTGCTTTTGGAAAAACATTGGAAGCAACTGCTAAAAAAGATACTTGGAAAGAGAACTTAGGGAAAATGTTCTGTTGGGTTGGAGGAGTGCACTCACCCAAGCTGCTAATTTGTCTGGTTGGGATGTCACCAACTACAGGAGTGAAAATGAGCTGA 510 0.4235 MSSSSSYTNPQWLYDVFLSFRGKDTRSNFISHLHAALSNAGINAFVDYKLHKGTDLGPELLGAIEKSHISIIVFSKNYIESTWCLNELEKIMECRRTHGHVVMPVFYDVDPSVLRHQHGAFGKTLEATAKKDTWKENLGKMFCWVGGVHSPKLLICLVGMSPTTGVKMS* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g4754 169 Gene3D - 8 151 IPR035897 -
Psa4g4754 169 ProSiteProfiles TIR domain profile. 12 141 IPR000157 GO:0007165
Psa4g4754 169 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 1 139 - -
Psa4g4754 169 Pfam TIR domain 14 138 IPR000157 GO:0007165
Psa4g4754 169 SMART till_3 13 154 IPR000157 GO:0007165
Psa4g4754 169 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 130 IPR035897 -
Psa4g4754 169 PANTHER TMV RESISTANCE PROTEIN N-LIKE 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g4754 Psa-Chr4 418139162 418139953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g4754 16 150 Miscellaneous Gene Families AT4G19920 40.741 4.40e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g4754 - - mtr:MTR_8g011725 200.29