Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1293 ATGGCTGAATCATTCCTCTTCTGCATTGCCGAATCACTGATAGCAAAACTTGCTTCTTGGGCATATGAAGAAACTTCCATGGTGCTGGGTGCATACAAAGATCTTCGAGAGTTTACACGAACTCTATCATACCTCAAAGCAGTGCTGTTAGATGCAGATCAGAAGCAGGAAGACAACCAGGAGCTTCAGGAATGGCTGAGGCAGATCAAACTCGTCTTCTCTGATGCTGAAAACGTGTTGGAAGAACTGGAGTATGAAAACCTTAGAAAGAAACATGGCATTGACAGTAACAAAATCAAGGTAGGACAGTTCTTCTCAAATTCCAATCCAATTGTTATCCGTCATAGGATTGCTAGAAAGATCAAAGAAATCAAGAATGGATTAGATAGAGTAGCAGCTGATAGGCATAAGTTTGGTCTAAAAATCATTGATGTTGATGGAAGAGTGGTGCATAAGAGAGAAATGACATACTCCCATGTTGATTCAGATGTGATTGGAAGGGAACATGATAAAGAAAACATCATAAAGCTTTTGCTTTTGCATGGTAATGATAGAACTCTCTCTGTTATCCCCATTGTGGGGATTGGGGGTTTGGGAAAGACCACACTTGCAAAGCTTGTGTTTAATGATAGTAGGATGGATGAGTGTTTTGAGTTGAAGATGTGGATAATTAATTCTGCTAATGATTCTAGTTCTGCTGATACTCCTGTTCACCACCAACAAAAATTTAAAGATTTGGATATCGAGCAGCTGCAGAATCGTCTCAGGAAGAAACTTAGAGGTCAGAAGTTCCTTCTGATCTTTGATGATGTGTGGAATGGAAGCCGTGTTGAATGGGTTCGGATGAGAGATTTAATACAGGTAGGTGCTGTTGGGAGTAAAATTGTAGTGACTACTCGTAGTCACAATATTGCTTCCATGATGGGCACCCTTCCATCTCACATTTTGGAAGGGCTTTCTCCAGAGGATTCATTCTGCAACAGTCTTGTGGTGCTTCCTGAGTGGCTTTCAGCTATGAATTGTCTGAAAACACTTTGTATCACAGATTGCCCTAATGTGTTGTCTCTTCCCAATGACATCCATGGCCTTCCCACCCTCGAGCGTTTAGAAATTCATGGTTGTCCGGAATCACTTGGAAAGTCTCAGCTGCAAGTTGGAGAGTCTTCACACAAACCTTAA 1179 0.4139 MAESFLFCIAESLIAKLASWAYEETSMVLGAYKDLREFTRTLSYLKAVLLDADQKQEDNQELQEWLRQIKLVFSDAENVLEELEYENLRKKHGIDSNKIKVGQFFSNSNPIVIRHRIARKIKEIKNGLDRVAADRHKFGLKIIDVDGRVVHKREMTYSHVDSDVIGREHDKENIIKLLLLHGNDRTLSVIPIVGIGGLGKTTLAKLVFNDSRMDECFELKMWIINSANDSSSADTPVHHQQKFKDLDIEQLQNRLRKKLRGQKFLLIFDDVWNGSRVEWVRMRDLIQVGAVGSKIVVTTRSHNIASMMGTLPSHILEGLSPEDSFCNSLVVLPEWLSAMNCLKTLCITDCPNVLSLPNDIHGLPTLERLEIHGCPESLGKSQLQVGESSHKP* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1293 392 PANTHER DISEASE RESISTANCE PROTEIN RP 19 324 IPR044974 GO:0006952
Lja1g1293 392 Gene3D - 150 312 IPR027417 -
Lja1g1293 392 Gene3D - 10 121 - -
Lja1g1293 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 325 IPR027417 -
Lja1g1293 392 Pfam Rx N-terminal domain 11 96 IPR041118 -
Lja1g1293 392 Coils Coil 66 86 - -
Lja1g1293 392 PRINTS Disease resistance protein signature 258 272 - -
Lja1g1293 392 PRINTS Disease resistance protein signature 189 204 - -
Lja1g1293 392 Pfam NB-ARC domain 168 325 IPR002182 GO:0043531
Lja1g1293 392 CDD RX-CC_like 2 126 IPR038005 -
Lja1g1293 392 SUPERFAMILY RNI-like 325 375 - -
Lja1g1293 392 PANTHER OS08G0543100 PROTEIN 19 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1293 Lja-Chr1 13444349 13446889 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1293 - - pvu:PHAVU_001G134400g 395.201