Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01962 ATGGCGGAATCATTTCTCTTCAGCATGGCGGAGTCACTCATAGCAAAGCTTGCTTCTCGGGCTTATGAGGAAGCTTCTCAGGTGCTGGGTGTATATGATCAACTCAAAGAGTTTAAACAAACTCTCTCATTAGTCAAGGCTGTGCTGTTAGATGCTGACCAAAAGCAGGAACACAACCATGAGCTGCGTGAATGGTTGAGACAAATCAAGCGTGTCTTCAATGATGCCCAAGATGTGCTGGATGAATTTCAGTGTCAAACACTACGAAAGCAAGTGGTCAAAGTTCATGGTACAACCAAGGAAAAGgactatAATTTCAATAATTTGTTGGTAACTTCATTTTGGGGGGCACTTGGACTCCTTGAATCACCAGAAAATAATAGGATGCCAGGTGATGTTGCTAATCAGTATTTGCATGAACTACTTTCAAGATCTTTTATTCAAGATTTTTTCAACTTTGGAACTATATGTTCATTTTCCATACATGACTTGGTTCATGATCTTGCCTTGTTTATTGCAAAAGATGATTGTCTACTTGTAAATTCTCATATTCAAAGTATACCTGAGAATGTTCGGCACCTATCTATTGTTGAAAACGATTTACATGGCAAATTATTCGCCACAAAAGCGGTAGGTGTGAGAACTGTTCTCTTTCCTAATGAAGGTGTGGGAGCCAACAGTGAAGCTTTCCTCACATTGGTTTCGAGGTACAAATACCTGCAGATTTTGGATTTAAGTAATTCTACATTTGAAACTTTGCCTCGTTTCATCGGGAAGCTAAAACATTTACGATATTTCAGTCTTGAAAATAATAAGAAAATTAAGATACTCCCTGATTCTATTTGTAAGCTTCAAAATTTGCAAGTGTTGGATCTTAATAAATGCATGAAGCTAGAATCATTGCCCAAAAGATTAAGAAAATTGATTAGTCTCCGAGAATTTTTCATAACCACAAAGCAATCTGTTTTGCCGGAGAATGAGATTGCACACTTGAGTTCTCTTGAATCTTTGGTTATAACTAATTGCAACAATCTGGAGTCTTTATTCTCAGGGATAGAACTCCCATTTCTTAAAACATTGCTTGTTGATAACTGTGAGAGACTAAAGGCTTTTCCACTGGATAGTAAACATTATCCTGCATTAGAGACTTTGGCTGTTTATAGCTGTGACAATTTGGATTTGTCCAAGGGCCATGAAGACCAGAACTCCAACTTAAAGTTAAAATCAGTCCTATTTATATCTTTGCCAGAGCTAGGGACTTTGCCTCATTGGCTTCAAGGATCTGCTAACACATTACTATCCTTGGTACTGGATGACTGCCGGAATCTTGAGGTGCTTCCGGATTGGCTGCCGATGCTAACTTGTCTGGAAGTAATTTTTATCATCAATTGTCCAAAGTTGCAGTCTCTTCCAGATGGAATACAATGCCTCACTTCCCTTGAACGTTTGGAAATTGAAGACTGTCCCGAGTTGTGCACAAAATACATGCCGGAAGTTGGAGAGTGTTGGAACCAAATATCACACATCAAACAGATTACGATTAGAGAGTAA 1551 0.3849 MAESFLFSMAESLIAKLASRAYEEASQVLGVYDQLKEFKQTLSLVKAVLLDADQKQEHNHELREWLRQIKRVFNDAQDVLDEFQCQTLRKQVVKVHGTTKEKDYNFNNLLVTSFWGALGLLESPENNRMPGDVANQYLHELLSRSFIQDFFNFGTICSFSIHDLVHDLALFIAKDDCLLVNSHIQSIPENVRHLSIVENDLHGKLFATKAVGVRTVLFPNEGVGANSEAFLTLVSRYKYLQILDLSNSTFETLPRFIGKLKHLRYFSLENNKKIKILPDSICKLQNLQVLDLNKCMKLESLPKRLRKLISLREFFITTKQSVLPENEIAHLSSLESLVITNCNNLESLFSGIELPFLKTLLVDNCERLKAFPLDSKHYPALETLAVYSCDNLDLSKGHEDQNSNLKLKSVLFISLPELGTLPHWLQGSANTLLSLVLDDCRNLEVLPDWLPMLTCLEVIFIINCPKLQSLPDGIQCLTSLERLEIEDCPELCTKYMPEVGECWNQISHIKQITIRE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01962 516 PANTHER DISEASE RESISTANCE PROTEIN RP 103 387 IPR044974 GO:0006952
Cca03g01962 516 Pfam Leucine rich repeat 239 294 IPR001611 GO:0005515
Cca03g01962 516 Gene3D - 10 111 - -
Cca03g01962 516 Gene3D Ribonuclease Inhibitor 175 428 IPR032675 -
Cca03g01962 516 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 103 387 - -
Cca03g01962 516 Gene3D Ribonuclease Inhibitor 429 514 IPR032675 -
Cca03g01962 516 SUPERFAMILY L domain-like 161 496 - -
Cca03g01962 516 CDD RX-CC_like 2 83 IPR038005 -
Cca03g01962 516 Pfam Rx N-terminal domain 11 96 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01962 Cca-Chr3 39536959 39539535 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01962 - - gmx:100805394 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01962 03 39536959 39539535 Cca03g01962 03 39536959 39539535 ECH