Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01960 ATGGCGGAATCTTTTCTCTTCAGCATTGCTGAGTCACTCATAACAAAACTTGCTTCTCAGACTTTTGAAGAAGCTTCTCGTGTGCTGGGAGCCAACAGCGAAGCTTTCTTTACATTGATTTCAAGGTACAAATACTTGCAGATATTGGATTTAAGTTATTCGACAGTTGAAGCATTGCCTCATTTCATCGGGAAGTCAAAACATTTAAGATCTCTCAGTCTTTATAATAATAAGAAAATTAAGAGACTCCCTGATTCTATTTGTAAGTTACAAAGTTTACAAGTGTTTGACCTTGGTGGATGCGAGGAGCTGGAAGCGTTACCCAAAGGATTAAGAAAATTGATCAGTCTCCGAGATTTAGTCATAACCACAAAGCAAGTTGTTTTTCCTGAGAAGGAAATTACAAACTTGAGTTCTCTTAAATATTTGACTATTGAATGTTGCAACAATGTGGAGTCTTTATTCTTAGAGATAGAACTTCCTGTTCTTAAAGCATTGGATGTTAATAGCTGTAAGAAACTAAAATGTTTGCCACTTGAAAGTAAACATTTTCCAGCTTTAGagattttgagtgttaggaactgtgaccagttggaattgaccagtgaccatggtgatcaAAATCTCTACTTAAGGCTAAAAACAGTAATATTTGATTCTTTGCCACAGCTACTGACTTTGCCTCATTGGTTTCAAGGATCTGTTAACACATTACTATCCTTGATACTAGGGAACTGCAACAATCTTGAGGTGCTCCCAAATTTTCTGCCAATGGTAACTTGTCTGAAACTACTACTTATCAATGATTGTCCAAAGTTGGGGTCTCTTCCAGAGGGCATCTATTGCCTCACTGCCCTTGAATGTTTGGAAATCATAAACTGTCCTGAATTATGCAGAAAATACACGCTGCAAGTAGCAGAGTATTGGAGCCAAATATCTCACATCAAACAGATTAGGATTGTTGATTCAAATCTTTGA 978 0.3456 MAESFLFSIAESLITKLASQTFEEASRVLGANSEAFFTLISRYKYLQILDLSYSTVEALPHFIGKSKHLRSLSLYNNKKIKRLPDSICKLQSLQVFDLGGCEELEALPKGLRKLISLRDLVITTKQVVFPEKEITNLSSLKYLTIECCNNVESLFLEIELPVLKALDVNSCKKLKCLPLESKHFPALEILSVRNCDQLELTSDHGDQNLYLRLKTVIFDSLPQLLTLPHWFQGSVNTLLSLILGNCNNLEVLPNFLPMVTCLKLLLINDCPKLGSLPEGIYCLTALECLEIINCPELCRKYTLQVAEYWSQISHIKQIRIVDSNL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01960 325 PANTHER - 43 176 - -
Cca03g01960 325 SUPERFAMILY L domain-like 37 313 - -
Cca03g01960 325 Gene3D Ribonuclease Inhibitor 32 208 IPR032675 -
Cca03g01960 325 PANTHER - 133 297 - -
Cca03g01960 325 Gene3D Ribonuclease Inhibitor 209 315 IPR032675 -
Cca03g01960 325 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 43 176 - -
Cca03g01960 325 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 133 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01960 Cca-Chr3 39528421 39531036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01960 46 204 Receptor kinase-like Gene Family AT5G62230 28.395 2.55e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01960 - - gmx:100805394 344.354