Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1396 ATGGCTGAATTATTCCTCTTCAGCATCGCAGAATCACTCATAGCAAAGCTTTCTTCTTGGACATATGAAGAAACTTCACAGGTGCTGAGGTTATACCACCATCTGCGAGAGGTTTCACAAACTCTTTCATTAGTCAAGGCGGTGCTGTTAGACGCTGAGGAGAAGCAGCAGGAGAATTATGAGATGCGGGAATGGCTGAGGCAGATCAAACATGTCTTCTCTGATGCTGAAAATATGTTGGATGAATTTGAGTGCGAAACATTACGAAAAGAAGTTGTCCAAGCTCATGGCAGCACCACAATCAAGGTAGCACACTTCTTCTCAAGTTCTAATCCACTTGTTTTTCATTATAGAATGGCTCAACAGATCCAAAAAATCAAGAAGAGATTAGACAAGGTTGCAGCAGACAGACATAAGTTTGGTCTTGAAACAATTGATGTTGATAGACGTTCTGTACATAGGAGGGATATGACATACTCCTACGTTATTGATTCGGATGTCATAGGAAGGAATCAAGATAAAGAAAATATTATACAGCTTTTGGTGCAACAGAACCCGAAAAATAATGACAAAAGTCTGTCTATTATCCCCATTGTGGGGATGGGAGGCCTGGGAAAGACCACTCTAGCAAAAATTGTGTTCAATGATAGGAGGATAAATGAGTTGTTCCCATTGAAGATGTGGGTTTGTGTTTCTATTGATTTTGAAATTAAGCAAGAGATCATTAAAATTATCAACTCTAATAATGCTTCTGCCCACCAACAAAATTTAGACAAATTAGATGTGGAGCAACTTCAAAGTCAATTAAGAAACAAACTTGTCAGTCAAAAATTCTTACTAGTATTAGATGACGTGTGGAATGAAGATCTTGTTAAATGGGTTGAGTTGAGGAATTTAATGCAAGTAGGTGCTGCGGGAAGTAAAATTTTGGTAACTACACGCAATCACGCAACAGCTTCCATGATGGGCACGGTTCCCTCTTACATTTTAGAAGGCCTTTCCGAGGAGGATTCATTGTCTCTGTTTGTCAAATGGGCATTTAAAGAAGGAGTAGAGAAAAGGTATCCATATTTAATAGATATTGGGAGAGAAATTGTGAAAAAGTGCAAAGGGGTGCCTTTGGCAGTGAGAACATTAGGAGGTTTACTATATTTGAAAGATAAAAAAGAGGAATGGGAATTTGTGAGAGACAACAAAAATTGGAGTTCAATAAAAGTTGGCAATGCTATGTTCCCTCCACTTAAATTAAGTTTTGATCAAATGCCATCCAATTTGAGGAAATGCTTTGCTTTGTTCAACCTTTACCCATGTGGCTATGCATTTGAGAGTTTTGATGTTACATCGCTTTGGGGAGCACTTGGTCTCCTTCCATCACCAAATAGAAATCAAATATTGAAACACGATGCAAATCAATATATCAGTGAACTATTTTCAAGATCTTTTCTGCAGGATGTTGTTGACTACGGCATTGGTTTTGCTTTTAAAATACATGACTTGGTGCATGATAATGCACGCTATTTGGGAAAGGACTCTATAATTGTAAGATACCCCTTTGTATTTACACCCGAACACAGGTATGTCCAGCATCTATCTTTTCCTGAAAATGTTGGAATTGAAAATTTTCCAATCCAAAAATTTGTTGGTGCAAGAACCATACTATTTCCTACCCCAGGAGTAGGAGCCAACAGTGAAGCTTTTTTGCTTAAATTCGTGTCACGATGCAATTATTTGCGATTTTTAGATTTAAGTGATTCTATGTATAAAGTTTTGCCTCCTTACATTGGCAAGCTGAAACATTTAAGATATCTCAGTCTTGAAAATAATAAAAGCCTAAAGAGACTTCCTGATTCTCTTTGCAACCTGCTAAAGTTGGAAGTTTTGATACTTAGTAGATGTACAGAGCTTGTAGCACTGCCTAAAGGTTTAAGAAAAATGATCAGTCTTCAACATTTGGAGATAACCACAAAGCAACGTGTTTTGCCAGAGGATGAGATTGCAAACTTGAGTTCTCTTCAGACTCTCAGAATCGAATTTTGCAACAATGTGGAATCTTTGTTTGGAGGGATTAAACTCCTTACTCTTAAAGTATTGTGTATTACTAGTTGCCAGAGTCTAAAGTCCTTGCCACTTGATATTGAATATTTTCCTAAATTAGAGACTTTGTTAGTTGATAACTGTGATGTGTTGGAGTTGTCAAATGAGCATAACCAAAATTCCAACTTGAGGTTGAAGATTGTAAATTTCATTTCATTGCCCCAGTTATTGACCTTGCCTCACTGGATTCAAGGTTCCACGGATACATTACAGTACTTGTTAATTTCAAGCTGCAACAATCTTGTGGGGCTTCCTCAATGGCTATCGGCTATGACTTGTCTGAAAACACTGCGTGTCATAAGCTGTCCTAATATGTTGTCTCTCCATGAAGACATCCATCACCTCCCCACCCTTGAACGATTGGAAATTGACGGTAATCTTGAATCGTGGCAACACTTAACCATTGATGAACCAGAACAAGTGGAAGAAAGGATAGAAGAGTTGGAGTAA 2544 0.3797 MAELFLFSIAESLIAKLSSWTYEETSQVLRLYHHLREVSQTLSLVKAVLLDAEEKQQENYEMREWLRQIKHVFSDAENMLDEFECETLRKEVVQAHGSTTIKVAHFFSSSNPLVFHYRMAQQIQKIKKRLDKVAADRHKFGLETIDVDRRSVHRRDMTYSYVIDSDVIGRNQDKENIIQLLVQQNPKNNDKSLSIIPIVGMGGLGKTTLAKIVFNDRRINELFPLKMWVCVSIDFEIKQEIIKIINSNNASAHQQNLDKLDVEQLQSQLRNKLVSQKFLLVLDDVWNEDLVKWVELRNLMQVGAAGSKILVTTRNHATASMMGTVPSYILEGLSEEDSLSLFVKWAFKEGVEKRYPYLIDIGREIVKKCKGVPLAVRTLGGLLYLKDKKEEWEFVRDNKNWSSIKVGNAMFPPLKLSFDQMPSNLRKCFALFNLYPCGYAFESFDVTSLWGALGLLPSPNRNQILKHDANQYISELFSRSFLQDVVDYGIGFAFKIHDLVHDNARYLGKDSIIVRYPFVFTPEHRYVQHLSFPENVGIENFPIQKFVGARTILFPTPGVGANSEAFLLKFVSRCNYLRFLDLSDSMYKVLPPYIGKLKHLRYLSLENNKSLKRLPDSLCNLLKLEVLILSRCTELVALPKGLRKMISLQHLEITTKQRVLPEDEIANLSSLQTLRIEFCNNVESLFGGIKLLTLKVLCITSCQSLKSLPLDIEYFPKLETLLVDNCDVLELSNEHNQNSNLRLKIVNFISLPQLLTLPHWIQGSTDTLQYLLISSCNNLVGLPQWLSAMTCLKTLRVISCPNMLSLHEDIHHLPTLERLEIDGNLESWQHLTIDEPEQVEERIEELE* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1396 847 Pfam Rx N-terminal domain 11 98 IPR041118 -
Pvu1g1396 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 431 IPR027417 -
Pvu1g1396 847 CDD RX-CC_like 8 134 IPR038005 -
Pvu1g1396 847 PRINTS Disease resistance protein signature 195 210 - -
Pvu1g1396 847 PRINTS Disease resistance protein signature 272 286 - -
Pvu1g1396 847 PRINTS Disease resistance protein signature 369 383 - -
Pvu1g1396 847 PRINTS Disease resistance protein signature 619 635 - -
Pvu1g1396 847 Pfam NB-ARC domain 172 400 IPR002182 GO:0043531
Pvu1g1396 847 Gene3D - 10 124 - -
Pvu1g1396 847 PANTHER OS08G0543100 PROTEIN 23 807 - -
Pvu1g1396 847 SUPERFAMILY L domain-like 495 824 - -
Pvu1g1396 847 PANTHER DISEASE RESISTANCE PROTEIN RP 23 807 IPR044974 GO:0006952
Pvu1g1396 847 Gene3D - 418 506 IPR036388 -
Pvu1g1396 847 Gene3D Ribonuclease Inhibitor 559 690 IPR032675 -
Pvu1g1396 847 Coils Coil 66 86 - -
Pvu1g1396 847 Gene3D - 150 327 IPR027417 -
Pvu1g1396 847 Gene3D Ribonuclease Inhibitor 691 842 IPR032675 -
Pvu1g1396 847 Gene3D - 332 417 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1396 Pvu-Chr1 37823523 37828450 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1396 - - gmx:121174109 1395.95