Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1171 ATGGCGGAATCATTTCTCTTCAGCATTGCAGAGTCACTCCTATCAAAGCTTGCTTCTCAGGCTTATGAGGAAGCTTCTCGTGTGCTGGGTTTGTACGACCATCTCAAAAACCTTAAAGACACCCTATCATTAGTCCAGGCTGTCCTGTTGGATGCTGATCAAAAGCAGGAGAAGAACCATGAGCTGCGGGTATGGCTGAGGCAGCTCAAACGTGTCTTCTTTGATGCCGAAAATGTTCTCGATGAATTTGAATGCCAAACACTGCAGAACCAAGTTGTCAAAGCTCATGGTACCACCAAAGACAAGGTAAGTCACTTCTTATCAACTTCTAATCCACTTGTTTTTCGTTACAAGATGGCTCAACAAATCAAAGATATCAGCATGAGACTAGACAAGGTTGCAGTTGATAGGCATAAGTTTGGCCTTCAACCAATTGATGTTGACACACGTGTTGTGCACGTGAGAGAGTGGGAATATTCGACACACTCCCATGTGGACGATTCAGATGTGATAGGAAGGGAACAAGACAAAGCAGAGATCATAGAGCTCTTGATGCAGCAGAATCCCAATGATGATCATAAAAGTCTCTCTGTTATCCCCATAGTGGGGATGGGAGGCTTGGGAAAGACCACACTTGCAAAGTTTGTGTTCAATGACAAGAAGATAGATGAGTGTTTCCCATTGAAGATGTGGGTGTCTGATTCTGATGACTTTGACCTTAAGCAACTCATTATCAAAATCATCAATTCTGCCAATGCTAATGATTCTGTTTTTCTTGCTGATGCTCCTGATGGCCAAAAGAATTTAAGCAAAATGGGTCTGGAGACTCTGCAAAATCAATTGAGACACAAACTTGCTGATCAGAAGTTCCTACTCGTCTTGGACGGCGTATGGAAAGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATTCATGTAGGTGCTGCTGCAGGAAGTAAGATTCTAGTTACTACACGTAGTCATTCCATTGCTTCCATGATGGGCACAGTTTCCTCTCATATTTTAGAAGGTCTTTCTCTGGAGGATTCATTGTCTTTGTTTGTCAGATGGGCGTTTAATGAAGGAGAAGAGAAAAAATATCCTCGGTTGATAAAGATTGGCAGAGAAATCGTGAAAAAATGCAGAGGGGTTCCATTGGCGCTGAGAACACTAGGGAGTTTACTATTTCCCAAATATGACACAATTCAGTGGGAAGATGTGAGAGACAATGAAATTTGGTATTTGCCACAGAAAAAAGATGACATTTTACCAGCCCTCAAAGTGAGTTACGATCTCATGCCATCCTATTTGAGGCAGTGCTTTGCTCTATTTTCTCTTTACCCTAAGGATTACAAATTTTATAGTTATGATGTGATTCAACTTTGGGGGGCACTCGGGTTCCTTGCATCACCAAAAAATAATAGGGCTCAAGATGATATTGCGATTCAGTATTTGTGGGAACTATTCTCAAGATCTCTTCTTCAAGATTTTGTAAGCCATGGCACCTATTATTCATTTTGCTTACATGATTTGGTGCATGATCTTGCTCTGTTCGTTGCAAAAGATGATTGTCTACTTGTAAATTCCCACATTCAAAGTATACCTGAGAGCATTCAGCATCTATCTTTTGTTGAAAAAGATTTTCATGGCAAATCACTCACCACAAAAGCAGTAGGTGTGAGAACCATATTTTATCCTGATGCTGGAGCGGAAGCAAACTTTAAAGCTTATAAATACTTGAGGATTTTGCATTTAACGAATTCTACCTTTGAAACTTTGCCTCCTTTCATTGGGAAGTTAAAACATTTAAGATGTCTTAATCTTCGCAATAATAAGAAAATTAAGAGACTCCCTGATTCCATTTGTAAGCTCCAAAATTTGCAGTTTTTGTTCCTGGATGGGTGCACTGAGCTTGAAACACTGCCCAAAAGTTTAAGAAAATTGATAAGCCTCTATAATTTCGAGATAACCACAAAGCAAGCTGTTTTACCTGAGAACGAGATAGCAAACTTGAGTTATCTTCAATATTTGACTATTGGATATTGTGATAATGTGGAGTCTTTATTCTCAGGGATAGAGTTTCCTGTTCTTAAAGCACTGTCTGTTTGGTGCTGTAAGAGACTAAAGTCTTTGCCACTTGACAGTAAACATTTTCCTGCATTAGAGACTTTGCATGTTAGATACTGTGACAAGTTGGAATTGTTCAAGGGCCATGAAGACCAAAACTTCTACTCAAAGTTAAAAGAAGTAGGATTTTGGGAAATGCCACAGCTAGAGATTCTACCTCATTGGGTTCAAGGATGTGCTAACACATTACTATCCTTGCATCTATCATACTGCTTCAATCTTGAGGTGCTTCCTGATTGGCTGCCAATGCTAACTAATCTGAGAGTACTGGATATTGAACTTTGTCCAAAGCTTCGGTCTCTTCCTGATGGCATGCATTGCCTCACTGCCCTTGAACATTTGCGAATCAAAGATTGTCGTGAATTATGCATAAAATACAAGCCGCAAGTTGGAGAGTGTTGGGACCAAATATCACACATCAAGCAGATTACGATTGATGAACAAGAAATCTGGATGAAGAGGTAG 2595 0.4 MAESFLFSIAESLLSKLASQAYEEASRVLGLYDHLKNLKDTLSLVQAVLLDADQKQEKNHELRVWLRQLKRVFFDAENVLDEFECQTLQNQVVKAHGTTKDKVSHFLSTSNPLVFRYKMAQQIKDISMRLDKVAVDRHKFGLQPIDVDTRVVHVREWEYSTHSHVDDSDVIGREQDKAEIIELLMQQNPNDDHKSLSVIPIVGMGGLGKTTLAKFVFNDKKIDECFPLKMWVSDSDDFDLKQLIIKIINSANANDSVFLADAPDGQKNLSKMGLETLQNQLRHKLADQKFLLVLDGVWKEDRVKWVELRNLIHVGAAAGSKILVTTRSHSIASMMGTVSSHILEGLSLEDSLSLFVRWAFNEGEEKKYPRLIKIGREIVKKCRGVPLALRTLGSLLFPKYDTIQWEDVRDNEIWYLPQKKDDILPALKVSYDLMPSYLRQCFALFSLYPKDYKFYSYDVIQLWGALGFLASPKNNRAQDDIAIQYLWELFSRSLLQDFVSHGTYYSFCLHDLVHDLALFVAKDDCLLVNSHIQSIPESIQHLSFVEKDFHGKSLTTKAVGVRTIFYPDAGAEANFKAYKYLRILHLTNSTFETLPPFIGKLKHLRCLNLRNNKKIKRLPDSICKLQNLQFLFLDGCTELETLPKSLRKLISLYNFEITTKQAVLPENEIANLSYLQYLTIGYCDNVESLFSGIEFPVLKALSVWCCKRLKSLPLDSKHFPALETLHVRYCDKLELFKGHEDQNFYSKLKEVGFWEMPQLEILPHWVQGCANTLLSLHLSYCFNLEVLPDWLPMLTNLRVLDIELCPKLRSLPDGMHCLTALEHLRIKDCRELCIKYKPQVGECWDQISHIKQITIDEQEIWMKR* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1171 864 SUPERFAMILY L domain-like 509 838 - -
Gso3g1171 864 CDD RX-CC_like 2 134 IPR038005 -
Gso3g1171 864 Gene3D Ribonuclease Inhibitor 745 851 IPR032675 -
Gso3g1171 864 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 728 - -
Gso3g1171 864 Gene3D - 430 518 IPR036388 -
Gso3g1171 864 Gene3D - 345 429 IPR042197 -
Gso3g1171 864 Pfam Rx N-terminal domain 11 98 IPR041118 -
Gso3g1171 864 PANTHER DISEASE RESISTANCE PROTEIN RP 6 728 IPR044974 GO:0006952
Gso3g1171 864 Pfam NB-ARC domain 174 431 IPR002182 GO:0043531
Gso3g1171 864 Gene3D Ribonuclease Inhibitor 525 744 IPR032675 -
Gso3g1171 864 Pfam Leucine rich repeat 580 636 IPR001611 GO:0005515
Gso3g1171 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 444 IPR027417 -
Gso3g1171 864 Gene3D - 154 342 IPR027417 -
Gso3g1171 864 Gene3D - 10 124 - -
Gso3g1171 864 PRINTS Disease resistance protein signature 198 213 - -
Gso3g1171 864 PRINTS Disease resistance protein signature 284 298 - -
Gso3g1171 864 PRINTS Disease resistance protein signature 382 396 - -
Gso3g1171 864 PRINTS Disease resistance protein signature 792 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1171 Gso-Chr3 37235871 37238725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1171 534 646 Receptor kinase-like Gene Family AT3G28040 29.365 4.11e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1171 - - gmx:100805394 1530.38