Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0215 ATGGCTGAATCATTCATCTTCAGCATTGCTGAATCACTCATAACTAAGCTTGCTTCTCTTGCATACCAAGAAGCGTCTCGGGTGGTTGGTGTCTACGATGACCTCCAAGAGTTGAAAAGCAGTCTCTCATATGTGAAAGCTGTGCTGTTGGATGCAGAGCAGAAGCAGGAGCAGAACAACGAACTGCGGGAGTGGCTGAAGCAGATCAAACTCATCTTCTATGATGCTGAGAACGTGCTTGATCAAGTTGACTGTGAAACACTGCGCAAGCAAGTCATCAGAGACTACGGCACTCCCAAGGACAAGGTAGGCCGCTTCTTCTCGAGTTCTAATCCACTTGTGTTTCGTTATAAGCTTGCTCTTCAGATCAAAGATATTAGGATGAGATTAGACAGAGTCGCGGCTGATAGAGATAAGTTTGGGCTTCAAGTAATTGATMTTGATAGGCGAGTTGTGCATAGGAGGGAAATGACTTACTCCCATGTTGTTCAGTCTGATGTCATAGGAAGAGATTATGATAAAGAAAAGATCATAAAGCTCTTGATGGAACCGAGTCTTGACAACAATGTTGGCTCTAAACATATCTCTGTCATTCCCATTGTGGGAATTGGAGGTTTGGGAAAGACCACTCTTGCTAAGCTTGTCTTCAATGATGAAAGGATAATTGACTCCTTTCCGTTGAAAATGTGGGTGTGTGTGTCTGAAGACTTTAATATCAAGCAATTGATTATTAAGATCATCAATGCTGCTAGCAATTTTGTTTCTACTGGTGCTCTTCCGGGCCACCAAAATTTAAAAGAATTAGAGGTTGAACAATTGCAATATCGTCTAAGAAACATGCTTGTGGGTCAAAAGTTCATCCTGGTCTTAGATGACGTATGGAATGAAGATCGTGTTAAATGGGTTGAGATGAGGGATCTCATTTCAGTGGGTGCTAAAGGAAGCAAAGTTATAGTCACAACACGTAGCCAATCGATTGCTTCGATGATGGGTACCGTCACCTACTCGCACCATTTAGAAAGTCTTTCTCCCGGGGATTCATTGCATTTGTTTGTTAGATGGGCTTTTAAAGAAGGAGAAGAGGAAAAATATCCAGAATTGATAAGGATTGCAAGAGAAATCGTGGAAAAGTGCAAAGGAGTTCCTCTAGCGGTAAGAACATTGGGAAGTTCACTATTTTCCAAACACGAGAGACAAGAGTGGGAATCACTGAGAGACAAGGAGATTTGGAATTTGCCGCAAAAAGAGGATGATATCATACCTGCACTAAAATTAAGCTATGATGAAATGCCATCCCATTTGAGGCAATGTTTTGCTTTGCTCTCCCTTTATCCAAAGAACCTTGAATATAATTCTTTTGAGGTTGCTTCACTTTGGGGGGCAGCGGGTTTGCTTCCATTGCAAAGCCAAGATAAAACAATGGTAGACGTTGCACACCAATATTTGAGAGACTTAATGGCAAGATCTTTTCTTCATGACGTTTTTGATTGTGGCACCTTTTATGCGTTTTTCATACATGATTTAGTGCATGATCTTGCAGTATATGTTGCCAAAGATGTGTGCCAATTGGTCAGTTCAAACACTCAGGATATATCAGAAAATGTCCTGCATTTGTCTTTTGTTGAGAATGGTTTGCCTTACAACTCCATCAAGCCAAGCTTACAAGGTGCGAGAAGCATTCTGTTTCCAGTTGACCATGTGGGAGCCAGTGAAGCTTTCTTGAATGCATGGGTGACAAACTGCAGATACCTGCGATATTTGGATTTAAGAGATTCTACATGCGAGACTTTGCCTGAGTCAATTGGTAAGTTGAAACATTTAAGATATATTTCTCTTTGCAATAATAAAAGAATAAAGAGGCTCCCTAATTCTATTTGCAAGCTCCAAAATTTGCAAGTCTTGGGTCTCGATGGGTGTTCAAATCTTGAAACTGTACCGAAAAAGTTAAGAAAGTTGATCAGCCTGCAAAGATTGGAGATAACCACAAAGCAATCTATTTTGCCAGAGAGTGACATTGCAAAGTTGAATTGTCTTGAATTTTTATGTGTCCAAAATTGTGATAATTTAGAGTCCTTGTTTGTTGAGACAAGATTGCCTACACTTCGAACTTTGCAAGTTAGTGACTGTGTGAATCTAAAGTCTTTGCCACTTGATACTCACCATTTCCCTCAGTTAGAAACTTTGTTAATCAGCGGTGTTGCCAATGAAGATTGGCTTCATAGATCAGAGGATACTAATGCTGTCTTGAGGTTAAAAACCATTGTTCTTTCAGAAATGCTAACATTGCCTCATTCTCTCCAACAATATGCAAGCACGTTACAAACTTTGATGATTCTAGGTTGCTACGAGCTGGAGGTACTGCCGGAATGGCTGTCGAATCTGAGTTCTTTGAAATTTCTTATTATGGCCAGTTGTCCGAAATTGATGTCTCTTCCCAGTGATATCCACCGTCTAACAAGTCTCCAAGTTTTGCGAATCATAAATTGCAGAGAGTTATATGGAAAATACGAGCCGCAAGTTGGAAAGTGCTGGCCCATGATATCTCACATCAAGCATACTGACATTAGGAAGCCATGGGAGTAG 2583 0.4061 MAESFIFSIAESLITKLASLAYQEASRVVGVYDDLQELKSSLSYVKAVLLDAEQKQEQNNELREWLKQIKLIFYDAENVLDQVDCETLRKQVIRDYGTPKDKVGRFFSSSNPLVFRYKLALQIKDIRMRLDRVAADRDKFGLQVIDXDRRVVHRREMTYSHVVQSDVIGRDYDKEKIIKLLMEPSLDNNVGSKHISVIPIVGIGGLGKTTLAKLVFNDERIIDSFPLKMWVCVSEDFNIKQLIIKIINAASNFVSTGALPGHQNLKELEVEQLQYRLRNMLVGQKFILVLDDVWNEDRVKWVEMRDLISVGAKGSKVIVTTRSQSIASMMGTVTYSHHLESLSPGDSLHLFVRWAFKEGEEEKYPELIRIAREIVEKCKGVPLAVRTLGSSLFSKHERQEWESLRDKEIWNLPQKEDDIIPALKLSYDEMPSHLRQCFALLSLYPKNLEYNSFEVASLWGAAGLLPLQSQDKTMVDVAHQYLRDLMARSFLHDVFDCGTFYAFFIHDLVHDLAVYVAKDVCQLVSSNTQDISENVLHLSFVENGLPYNSIKPSLQGARSILFPVDHVGASEAFLNAWVTNCRYLRYLDLRDSTCETLPESIGKLKHLRYISLCNNKRIKRLPNSICKLQNLQVLGLDGCSNLETVPKKLRKLISLQRLEITTKQSILPESDIAKLNCLEFLCVQNCDNLESLFVETRLPTLRTLQVSDCVNLKSLPLDTHHFPQLETLLISGVANEDWLHRSEDTNAVLRLKTIVLSEMLTLPHSLQQYASTLQTLMILGCYELEVLPEWLSNLSSLKFLIMASCPKLMSLPSDIHRLTSLQVLRIINCRELYGKYEPQVGKCWPMISHIKHTDIRKPWE* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0215 860 PANTHER DISEASE RESISTANCE PROTEIN RP 6 785 IPR044974 GO:0006952
Amo16g0215 860 CDD RX-CC_like 2 134 IPR038005 -
Amo16g0215 860 Gene3D - 426 515 IPR036388 -
Amo16g0215 860 PRINTS Disease resistance protein signature 378 392 - -
Amo16g0215 860 PRINTS Disease resistance protein signature 197 212 - -
Amo16g0215 860 PRINTS Disease resistance protein signature 280 294 - -
Amo16g0215 860 PRINTS Disease resistance protein signature 626 642 - -
Amo16g0215 860 Gene3D - 341 425 IPR042197 -
Amo16g0215 860 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 785 - -
Amo16g0215 860 Gene3D Ribonuclease Inhibitor 748 839 IPR032675 -
Amo16g0215 860 Gene3D Ribonuclease Inhibitor 570 745 IPR032675 -
Amo16g0215 860 Gene3D - 10 123 - -
Amo16g0215 860 Pfam Leucine rich repeat 583 639 IPR001611 GO:0005515
Amo16g0215 860 Pfam NB-ARC domain 171 428 IPR002182 GO:0043531
Amo16g0215 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 441 IPR027417 -
Amo16g0215 860 SUPERFAMILY L domain-like 505 831 - -
Amo16g0215 860 Pfam Rx N-terminal domain 11 97 IPR041118 -
Amo16g0215 860 Gene3D - 149 334 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0215 Amo-Chr16 3253002 3255813 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0215 576 843 Receptor kinase-like Gene Family AT1G75640 25.267 4.68e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0215 - - gmx:100777049 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0215 16 3253002 3255813 Amo16g0215 16 3253002 3255813 ECH