Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele05g1539 ATGACGGGCCTTGTGATGGTGACGAAGGGCGGAGGATGCAGCGGAACCGGATGCAAGGAAGCGAAGAGAGGAAGAATTGCCGCCGAAGAAGAGCAAAGCCAGCTGTCACTCGTCGCACTCCTCTTAGCCGCTTTGAGGAAGTCCATGGTGTCTTGTCGGGTGGATCGACCCGACGAGGTTATCCCCTCCGTTCATCACATGGAAATAGGATGGCCCACCAACGTTCAACACATCACTCATGTAACATTCGATCGCTTCAATGGTTTTCTGGGTCTTCCCGTTGAGTTCGAGATCGAGATCCCGGGTCGGGTTCCCAGTGCCAGTATAAGTGTGTTTGGCGTGTCAGTGGAATCTATGCAGTGTTCTTATGATTCAAAAGGAAATAGCGTGCCCACTATTCTCTTACTCATGCAGGAGCGTTTATACTCACAGGGAGGCCTAAAGCGGGAAGGAATATTTCGCATAAACCCAGAAAACAGTCAAGAAGAACATGTAAGAGACCGGTTGAATAGGGGGATTGTGCCGGGTGACATTGATGTGCACTGTTTGTCGGGCTTAATTAAAGCCTGGTTTCGAGAGCTTCCTTCAGGAGTACTTGATGGACTTTCACCGGAACAAGTTCTTCAGTGCAACACAGAAGAAGAATCTGTTGAGCTCGTGAAGCAGCTAAAACCAACTGAGGCTGCCTTGCTTAACTGGGCTATTGATCTCATGGCCGATGTTGTAGAGGAGGAAGAATTCAACAAAATGAATTCAAGAAATATCGCAATGGTCTTTGCCCCAAACATGACTCAGATGTCTGATCCATTAACTGCTCTGATGCACGCTGTCCAAGTGATGAACTTGCTGAAAACCTTGATAATGAAGACACTTAGAGAACGTGAAGAAACGACGACGGGTGGATATTCACCCATGTCATTTCGTTCATCGGATCGCCAGTCTGAGGAGGGGTATGACAGTCAGCAAGAAATGGAGGCCAGTGGTGAATTAAGAAGAACCAAGTCAGATTATGATGAACATGCACACTACAGCCACAGCAGCGAAGAGGAAGAAGAAAGTGGCGCCGAATCTTTGAGTGACATAGAAGAATGCATCTTGAAGCAGTTGGATGAGCACACAAAGGAACACTCGGAAGAACCTGCAGGAGATTTGCAGGAAGACTGTGCTAGCCCCATAAGTCGCTCTGGCAGTAACATGGAAACTGCTATGTCATATATTGATAGCAAAACGGAGAATTCTTGCTTGAGTTGCTCGCATTGTGAGAAATCAAGGACAGATCAGACTGTTGGGGGATCTAAAGTTGAGATGAGTAGTCCATCACTAGGATGTACAGTCAGCAGTGATTTGGAGATGATGGTCAAATTTACAGGTTCTGTAGTGCCAATGTTTACCTCTGATTAG 1401 0.4697 MTGLVMVTKGGGCSGTGCKEAKRGRIAAEEEQSQLSLVALLLAALRKSMVSCRVDRPDEVIPSVHHMEIGWPTNVQHITHVTFDRFNGFLGLPVEFEIEIPGRVPSASISVFGVSVESMQCSYDSKGNSVPTILLLMQERLYSQGGLKREGIFRINPENSQEEHVRDRLNRGIVPGDIDVHCLSGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAIDLMADVVEEEEFNKMNSRNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETTTGGYSPMSFRSSDRQSEEGYDSQQEMEASGELRRTKSDYDEHAHYSHSSEEEEESGAESLSDIEECILKQLDEHTKEHSEEPAGDLQEDCASPISRSGSNMETAMSYIDSKTENSCLSCSHCEKSRTDQTVGGSKVEMSSPSLGCTVSSDLEMMVKFTGSVVPMFTSD 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele05g1539 466 MobiDBLite consensus disorder prediction 312 352 - -
Lele05g1539 466 ProSiteProfiles CRIB domain profile. 69 82 IPR000095 -
Lele05g1539 466 MobiDBLite consensus disorder prediction 372 397 - -
Lele05g1539 466 ProSiteProfiles Rho GTPase-activating proteins domain profile. 114 295 IPR000198 GO:0007165
Lele05g1539 466 SUPERFAMILY GTPase activation domain, GAP 110 288 IPR008936 -
Lele05g1539 466 Pfam P21-Rho-binding domain 68 95 IPR000095 -
Lele05g1539 466 Gene3D Rho GTPase activation protein 102 298 IPR008936 -
Lele05g1539 466 Gene3D CRIB domain 63 100 IPR036936 -
Lele05g1539 466 CDD RhoGAP 131 287 - -
Lele05g1539 466 PANTHER MKIAA1688 PROTEIN 26 366 IPR044785 GO:0005096
Lele05g1539 466 MobiDBLite consensus disorder prediction 294 358 - -
Lele05g1539 466 SMART RhoGAP_3 128 291 IPR000198 GO:0007165
Lele05g1539 466 MobiDBLite consensus disorder prediction 297 311 - -
Lele05g1539 466 SMART PBD_5 69 103 IPR000095 -
Lele05g1539 466 Pfam RhoGAP domain 131 265 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele05g1539 Lele-ChrLele05 9874483 9876797 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1539 05 9874483 9876797 Lele13g2030 13 27530661 27532366 CCT
Lele05g1539 05 9874483 9876797 Lele14g1964 14 25872304 25875551 CCT
Lele05g1539 05 9874483 9876797 Lele15g0375 15 2145967 2147745 CCT
Lele05g1539 05 9874483 9876797 Lele16g0396 16 2156384 2162585 CCT
Lele13g2038 13 27564466 27567538 Lele05g1539 05 9874483 9876797 CCT
Lele14g1970 14 25904236 25907211 Lele05g1539 05 9874483 9876797 CCT
Lele15g0368 15 2104599 2107507 Lele05g1539 05 9874483 9876797 CCT
Lele16g0389 16 2122707 2125779 Lele05g1539 05 9874483 9876797 CCT
Lele05g1539 05 9874483 9876797 Lele05g1539 05 9874483 9876797 ECH
Lele05g1539 05 9874483 9876797 Lele07g1596 07 9877797 9880097 hybridization
Lele05g1539 05 9874483 9876797 Lele08g1385 08 8876433 8878750 hybridization