Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1964 ATGAAAGTCGTGCTAGGCCTCTGCACTGCACGTGGCCTGCTCAAGCTGAGAAAATGGGCTGATCTTGGCCCATGAGCGCGAAAGGCAACAAAACCTGAGGAGCAGTATCGAGGGAGAGTGCCAAAGATTTGTGAAGAAGCGAGGCGAAGCAGAGCAGCTAAGATGACCCAACAAGAGAAAGACCACACAAACTCACTCGTTCCGTTGCTGTTGAGTGCTTTGAGAAAATCAATGGTGTCATGTAGGATGCATCCGCCCGACGATGTAATCTCGGCGGTCACTCGTGACTTCGAAACTGGATGGCCCACCAACGTTCAGCACGTCACTCATGTCACTTTCGATCGCTTCAACGGCTTCCTGGGTCTGCCTGCCGACCTCCAGCTCGAGATTCCGGGTCGGGTTCCCAGCGCCAGTGCAAGTGTGTTTGGCGTCTCAGCGGAATCAATGCAGTGTTCCTATGATTCAAAAGGGAACAGTATCCCAACTATTCTGTTGTTAATGCAGGAGCGTTTATACTCACAGGGAGGCTTAAAGGCTGAAGGAATTTTTCGCATAAACCCAGAGAACAGCGAAGAGGAGAATGTGAGGGAGCAGTTGAATAGGGGGATTGTGCCGGACGACATTGATGTACATTGTTTGGCAGGCCTAATCAAGGCCTGGTTCCGAGAGCTCCCTTCGGGAATTCTAGATGGACTTTCTCCAGAGCAAGTTCTTAATTGCAATACAGAAGAAGAATACGTTGAACTTGTAAAGCAATTAAAGCCCACCGAAGCTGCATTGCTCAACTGGGCTGTTGATCTCATGGCCGATGTTGTTGAATACGAAGAATACAACAAAATGAACGCAAGAAATATTGCCATGGTTTTTTCTCCCAACATGACTCAGATGTCCGATCCGCTAACTGCTCTGATGCATGCGGTCCAAGTTATGAACTTGCTCATGACTCTTATAATGAAGACGCTCACAGAACGTGAAGAAGCGGCAGGTTCACCCGCGTCGTTTCGTTCATCTGTGGATGAATATGAAAGTGAAGAAGAAATGGATACTAGTGATGACGAAGAGGAGGAGGAGGAAGTCGAACCATTATGTGAGATAGAAGAGGAATATGCCGCGTCATTTACTGAAAGCGAAACTAGGAAGTCTAGTTCCAGTTCTTCATGCGAAGAAATGTCGGTGAGATCTAGTGTTGACACAGGTAACGTGGAGATAATTACTAAATTAACAGACACTTCGCCCGGTGCCACCGTTTGCGTCTAG 1257 0.4789 MKVVLGLCTARGLLKLRKWADLGPXARKATKPEEQYRGRVPKICEEARRSRAAKMTQQEKDHTNSLVPLLLSALRKSMVSCRMHPPDDVISAVTRDFETGWPTNVQHVTHVTFDRFNGFLGLPADLQLEIPGRVPSASASVFGVSAESMQCSYDSKGNSIPTILLLMQERLYSQGGLKAEGIFRINPENSEEENVREQLNRGIVPDDIDVHCLAGLIKAWFRELPSGILDGLSPEQVLNCNTEEEYVELVKQLKPTEAALLNWAVDLMADVVEYEEYNKMNARNIAMVFSPNMTQMSDPLTALMHAVQVMNLLMTLIMKTLTEREEAAGSPASFRSSVDEYESEEEMDTSDDEEEEEEVEPLCEIEEEYAASFTESETRKSSSSSSCEEMSVRSSVDTGNVEIITKLTDTSPGATVCV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1964 418 CDD CRIB 98 137 - -
Lele14g1964 418 SUPERFAMILY GTPase activation domain, GAP 139 318 IPR008936 -
Lele14g1964 418 MobiDBLite consensus disorder prediction 375 399 - -
Lele14g1964 418 FunFam Rho GTPase-activating protein 5 129 322 - -
Lele14g1964 418 Pfam RhoGAP domain 161 295 IPR000198 GO:0007165
Lele14g1964 418 MobiDBLite consensus disorder prediction 328 399 - -
Lele14g1964 418 PANTHER MKIAA1688 PROTEIN 47 394 IPR044785 GO:0005096
Lele14g1964 418 Pfam P21-Rho-binding domain 100 129 IPR000095 -
Lele14g1964 418 SMART RhoGAP_3 158 321 IPR000198 GO:0007165
Lele14g1964 418 MobiDBLite consensus disorder prediction 341 365 - -
Lele14g1964 418 CDD RhoGAP 161 319 - -
Lele14g1964 418 SMART PBD_5 99 133 IPR000095 -
Lele14g1964 418 Gene3D Rho GTPase activation protein 130 334 IPR008936 -
Lele14g1964 418 ProSiteProfiles Rho GTPase-activating proteins domain profile. 144 325 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1964 Lele-ChrLele14 25872304 25875551 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1539 05 9874483 9876797 Lele14g1964 14 25872304 25875551 CCT
Lele14g1964 14 25872304 25875551 Lele15g0375 15 2145967 2147745 hybridization
Lele14g1964 14 25872304 25875551 Lele16g0396 16 2156384 2162585 hybridization