Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele14g1970 ATGCGGGGAATCGGTTACTCCTTCCCCGAGGAAGTCCTCGAGCACGTCTTCTCCTTCATTCACCCCGACCAGGACCGCAACGCCATCTCCTTGGTCTGTAAGTCATGGTACGAGATCGAACGTTGGTGCAGGAGGAGCATTTTCGTCGGCAACTGCTATGCTGTTAGCCCTATGATGGTGGTCAAACGTTTTCCCAAGCTGAGATCCATTTCGCTCAAAGGAAAGCCTCACTTTGCGGACTTCAATTTGGTTCCTGAGGACTGGGGTGGTTATGCCTGCCCTTGGATCGAAGCTATGGCTAGTGCCTATCCGTGGCTAGAGGAGATCAGGCTCAAGAGGATGGTCATAACAGATGAGAGCTTGGAGCTCATTTCTAAATCATTCAAAAACTTCAAAGTCTTGGTATTGTCCTCGTGTGAGGGATTCAGTACCGATGGACTGGCTTCCATTGCTGCCAATTGCAGGAATTTAAGGGAGTTGGACTTGCGGGAGAGCGAAGTGGATGACCTTAGTGGGCATTGGCTAAGCCAGTTTCCTGATTCATTCACATCATTAGTTTCCCTTAACATCTCCTGCTTAGGTTCTGAGGTGAGTATTTGTGCCCTAGAGCGCCTGCTGGCTAGGTGTCCCAACCTGCAGTCTCTTCGCCTCAACCGTGCTGTGCCCCTTGAAAGGCTAGTCAACTTAATTGGTCGGTCACCTAACTTGGTTGAGTTAGGCACAGGAACTTACACAAGTGAGATGCAACCTGATGTCTTCTCAGACCTATCAAGAGCTTTTGTAGGGTGTAAACAACTGAAGAGCTTATCGGGCTTTTGGGATGCAATGCCATACTACCTTCCAGCTGTCTATCCTATCTCTTCCAGGCTTACTGCACTAAACTTGAGTTATGCTACTCCTGAGAGCCCCTATCTCATCAAGCTTGTCAGTGAATGCCAGAATTTGCAGCGTTTATGGGTGCTGGATTACATAGAAGATTCTGGCCTGGAAGCCCTTGCTGCATCATGCAAGGATTTGAGGGAGTTGAGGGTGTTTCCATCTGATCCATTTGGGTTAGAACCTAATGTTGCATTGACAGAAAGGGGCCTTATTTCTGTGTCTGCAGGCTGTCCCAAGCTCCAGTCAGTTCTCTATTTCTGTCGCCAAATGTCTAATGCTGCCCTAGTTACGATTGCCAGGAACAGGCCTAACATGACTCGGTTTCGTCTGTGTATTATTGATCCCCAAAAGCCTGACTACCTTACTCTTCAACCACTGGATGCTGGCTTTGGAGCAATTGTAGAGCATTGCAAGGACCTTCAGCGCCTATCCCTTTCTGGTCTTCTTACAGATCGTGTTTTTGAGTACATTGGAAATTATGGGAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGTGATCTGGGGCTTCATTACGTACTGTCTGGGTGTGACAGCCTTAGGAAGCTGGAGGTCAGGGACTGCCCCTTTGGTGATAAGGCCCTCCTGGCGAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCAATGTGAGCTTTGGAGCATGTAAGCTGTTGGGTCAGAAGATGCCTAGACTCAACGTTGAAGTCATTGATGAAAGGGGACCTCCAGATTCAAGGCCAGAGAGTTGTCCTGTGGAGAAACTATATATATACAGGACCATAGCAGGACCGAGAATGGACATGCCTGGTTTTGTTTGGCGAATATCTTCATTAAGAGTTTCGTGA 1746 0.4822 MRGIGYSFPEEVLEHVFSFIHPDQDRNAISLVCKSWYEIERWCRRSIFVGNCYAVSPMMVVKRFPKLRSISLKGKPHFADFNLVPEDWGGYACPWIEAMASAYPWLEEIRLKRMVITDESLELISKSFKNFKVLVLSSCEGFSTDGLASIAANCRNLRELDLRESEVDDLSGHWLSQFPDSFTSLVSLNISCLGSEVSICALERLLARCPNLQSLRLNRAVPLERLVNLIGRSPNLVELGTGTYTSEMQPDVFSDLSRAFVGCKQLKSLSGFWDAMPYYLPAVYPISSRLTALNLSYATPESPYLIKLVSECQNLQRLWVLDYIEDSGLEALAASCKDLRELRVFPSDPFGLEPNVALTERGLISVSAGCPKLQSVLYFCRQMSNAALVTIARNRPNMTRFRLCIIDPQKPDYLTLQPLDAGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGNYGKKLEMLSVAFAGDSDLGLHYVLSGCDSLRKLEVRDCPFGDKALLANAAKLETMRSLWMSSCNVSFGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTIAGPRMDMPGFVWRISSLRVS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele14g1970 581 SMART LRR_CC_2 370 394 IPR006553 -
Lele14g1970 581 SMART LRR_CC_2 430 453 IPR006553 -
Lele14g1970 581 SMART LRR_CC_2 312 335 IPR006553 -
Lele14g1970 581 SMART LRR_CC_2 154 191 IPR006553 -
Lele14g1970 581 SMART LRR_CC_2 103 127 IPR006553 -
Lele14g1970 581 SMART LRR_CC_2 128 153 IPR006553 -
Lele14g1970 581 SMART LRR_CC_2 479 503 IPR006553 -
Lele14g1970 581 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Lele14g1970 581 SUPERFAMILY F-box domain 7 46 IPR036047 GO:0005515
Lele14g1970 581 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Lele14g1970 581 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 85 536 - -
Lele14g1970 581 FunFam Transport inhibitor response 1 4 44 - -
Lele14g1970 581 SUPERFAMILY RNI-like 55 533 - -
Lele14g1970 581 FunFam Transport inhibitor response 1 45 575 - -
Lele14g1970 581 Gene3D - 4 44 - -
Lele14g1970 581 SMART fbox_2 8 49 IPR001810 GO:0005515
Lele14g1970 581 Pfam F-box 7 45 IPR041567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele14g1970 Lele-ChrLele14 25904236 25907211 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1970 14 25904236 25907211 Lele05g1539 05 9874483 9876797 CCT
Lele14g1970 14 25904236 25907211 Lele06g1388 06 8936451 8938770 CCT
Lele14g1970 14 25904236 25907211 Lele07g1596 07 9877797 9880097 CCT
Lele14g1970 14 25904236 25907211 Lele08g1385 08 8876433 8878750 CCT
Lele14g1970 14 25904236 25907211 Lele15g0368 15 2104599 2107507 hybridization
Lele14g1970 14 25904236 25907211 Lele16g0389 16 2122707 2125779 hybridization