Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1385 ATGACGGGGCTCGTAATGGTGACGAAGGGCGGAGGGTGCGGCGGAGGGAAGGGAGCTAAGAGAGGAAGAACTGCCGCCGAAGAAGAGCAAAACCAGCTGTCGCTCGTCGCACTCCTCTTGGCTGCTTTGAGGAAGTCCATGGTGTCGTGTCGGGTGGATCGACCCGACGAGGTTATCCCCTCCGTTCATCACATGGAAATCGGATGGCCCACCAACGTTCAGCACATTACTCATGTAACTTTCGATCGCTTCAATGGTTTTCTGGGTCTTCCCGTTGAGTTCGAGATCGAGATCCCGGGTCGGGTTCCCAGTGCCAGTGTAAGTGTGTTTGGCGTGTCAGCGGAATCTATGCAGTGTTCTTATGATTCAAAAGGAAATAGTGTGCCCACTATTCTCTTACTCATGCAGGAGCGTTTATACTCACAGGGAGGCCTTAAGCGGGAAGGAATATTTCGCATAAACCCAGAAAACAGTCAAGAAGAACATGTGAGAGACCAGTTGAATCGGGGGATTGTGCCGGATGACATCGATGTGCACTGTTTGTCGGGCTTAATTAAAGCCTGGTTTCGAGAGCTTCCTTCAGGAGTACTCGATGGACTTTCACCTGAACAGGTTCTTCAGTGCAACACAGAAGAAGAATCTGTTGAGCTCGTGAAGCAGCTAAAACCAACTGAAGCTGCATTGCTCAACTGGGCTATTGATCTCATGGCTGATGTTGTAGAGGAGGAAGAATTCAACAAAATGAATGCAAGAAATATTGCAATGGTCTTTGCTCCAAACATGACTCAGATGTCTGATCCATTAACTGCTCTGATGCACGCGGTCCAAGTGATGAACTTGCTGAAGACTTTGATAATGAAGACACTTAGAGAGCGTGAAGAAACAACGATAGGAGGATATTCACCCATGTCATTTCTTTCATCAGATCGCCAGTCTGAGGAGGGGTATGACAGTCAGCAAGAAATGGAGACCAGTGGTGAATTAAGAAGAACCAAGTCAGATTATGATGAACATGCACACTACAGCCACAGCAGCGAAGAGGAAGAAGGCGGCGCCGGATCTTTGAGTGACATAGAGGAATGCTTCTTGAAGCAGTTGGATGAGCACACAAAAGAACACTCAGAAGAACCTGCAGGAAATTTGCAAGAGGACTGTGCTGGCCCCATAAGTCGCTCTGGCAGTAACATGGAAACTGCCATGTCATTTAATGATAGCAAAACCGAGGATTCTTGCTTGAGTTGCTCGCATTGTGAGAAATCAAGGACGGCTCAGACTGTCCGGGGATCAAAAGTTGAGACGAGTAGTCCATCACTAGGATGTACAGGCAGCAATGATATGGAGATGATGGTTAAATTTGCAGGCTCTGTTTCACCAGTGCCAATGTTTACCTCCAATTAG 1398 0.4771 MTGLVMVTKGGGCGGGKGAKRGRTAAEEEQNQLSLVALLLAALRKSMVSCRVDRPDEVIPSVHHMEIGWPTNVQHITHVTFDRFNGFLGLPVEFEIEIPGRVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKREGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLSGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAIDLMADVVEEEEFNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETTIGGYSPMSFLSSDRQSEEGYDSQQEMETSGELRRTKSDYDEHAHYSHSSEEEEGGAGSLSDIEECFLKQLDEHTKEHSEEPAGNLQEDCAGPISRSGSNMETAMSFNDSKTEDSCLSCSHCEKSRTAQTVRGSKVETSSPSLGCTGSNDMEMMVKFAGSVSPVPMFTSN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1385 465 Gene3D CRIB domain 61 98 IPR036936 -
Lele08g1385 465 SUPERFAMILY GTPase activation domain, GAP 108 286 IPR008936 -
Lele08g1385 465 CDD RhoGAP 129 285 - -
Lele08g1385 465 FunFam Rho GTPase-activating protein 5 97 290 - -
Lele08g1385 465 Pfam P21-Rho-binding domain 66 93 IPR000095 -
Lele08g1385 465 ProSiteProfiles Rho GTPase-activating proteins domain profile. 112 297 IPR000198 GO:0007165
Lele08g1385 465 MobiDBLite consensus disorder prediction 323 347 - -
Lele08g1385 465 MobiDBLite consensus disorder prediction 300 322 - -
Lele08g1385 465 Gene3D Rho GTPase activation protein 99 293 IPR008936 -
Lele08g1385 465 MobiDBLite consensus disorder prediction 387 401 - -
Lele08g1385 465 MobiDBLite consensus disorder prediction 423 442 - -
Lele08g1385 465 SMART RhoGAP_3 126 289 IPR000198 GO:0007165
Lele08g1385 465 MobiDBLite consensus disorder prediction 369 401 - -
Lele08g1385 465 MobiDBLite consensus disorder prediction 296 354 - -
Lele08g1385 465 SMART PBD_5 67 101 IPR000095 -
Lele08g1385 465 Pfam RhoGAP domain 129 263 IPR000198 GO:0007165
Lele08g1385 465 ProSiteProfiles CRIB domain profile. 67 80 IPR000095 -
Lele08g1385 465 PANTHER MKIAA1688 PROTEIN 26 422 IPR044785 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1385 Lele-ChrLele08 8876433 8878750 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2038 13 27564466 27567538 Lele08g1385 08 8876433 8878750 CCT
Lele14g1970 14 25904236 25907211 Lele08g1385 08 8876433 8878750 CCT
Lele15g0368 15 2104599 2107507 Lele08g1385 08 8876433 8878750 CCT
Lele16g0389 16 2122707 2125779 Lele08g1385 08 8876433 8878750 CCT
Lele08g1385 08 8876433 8878750 Lele08g1385 08 8876433 8878750 ECH
Lele05g1539 05 9874483 9876797 Lele08g1385 08 8876433 8878750 hybridization
Lele06g1388 06 8936451 8938770 Lele08g1385 08 8876433 8878750 hybridization