Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0368 ATGCGGAGAATCGCTTACTCCTTCCCCGAGGAAGTCCTCGAGCACGTCTTCTCCTTCATTCACTCCGACCAGGACCGCAACGCCATCTCCTTGGTCTGCAAGTCATGGTACGAGATCGAACGTTGGTCCAGGATGAGCATTTTCGTCGGCAACTGCTATGCTGTTAGCCCTATGATGGTGGTCAAACGCTTTCCCAAGCTGAGATCCATTTCGCTCAAAGGAAAGCCTCACTTTGCGGACTTCAATTTGGTTCCTGAGGATTGGGGTGGTTATGCCTGCCCTTGGATCGAAGCTATGGCTTGTGCCTATCCGTGGCTAGAGGAGATCCGGCTCAAGAGGATGGTCATAACGGACGAGAGCTTGGAGCTCATTTCTAAATCATTGAAAAACTTCCAAGTCTTGGTATTGTCCTCGTGTGAGGGATTCAGTACGGATGGACTGGCTTCCATTGCTGCCAATTGCAGGAATTTAAGGGAGTTGGACTTGCGGGAGAGCGAAGTCGATGACCTTAGTGGGCATTGGCTAAGCCAGTTTCCTGATTCATTCACATCATTAGTTTCCCTTAACATCTCCTGCTTAGGCTCTGAGGTGAGTATATGTGCCCTAGAGCGCCTGCTGGCTAGGTGTCCCAACCTGCTGTCTCTTCGCCTCAACCGAGCTGTGCCCCTTGAAAAGCTAGTCAACCTAATTGGTCGATCACCTAACTTGGTTGAGTTAGGCACAGGAACTTACACTAGTGAGATGCAACCTGATGTCTTCTCAGACCTATCAAGAGCTTTTGTAGGGTGTAAACAACTGAAGAGCTTATGTGGCTTTTGGGATGCAATGCCATACTACCTTCCAGCTGTCTATCCTATTTCTTCCAGGCTTACTTCACTAAACTTGAGTTATGCTACTACTGAGAGCCCCTATCTCATCAAGCTTGTCAGTGGATGCCAGAATTTGCAGCGTTTATGGGTGCTGGATTACATAGAAGATTCTGGCCTGGAAGCCCTTGCTGCATCATGCAAGGATTTGAGGGAGTTGAGGGTGTTTCCATCTGATCCATTTGGGTTAGAACCAAATGTTGCATTGACAGAAAGGGGCCTTGTTTTGGTGTCTGAAGGCTGCCCCAAGCTCCAGTCAGTTCTCTATTTCTGTCACCAAATGTCTAATGCTGCCCTAGTTACGATTGCCAGGAACCGGCCTAACATGACTCGGTTTCGCCTTTGTATTATTGAGCCCCGAAAGCCTGACTACCTTACTCTTCAACCACTGGATGCTGGCTTTGGAGCAATTGTAGAGCATTGCAAGGACCTTCGACGCCTGTCCCTTTCTGGTCTTCTTACAGATCGTGTTTTTGAGTACATTGGAAGTTATGGGAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGTGATCTGGGGCTTCATTATGTACTGTCTGGGTGTGACAGCCTTAGGAAGCTGGAGGTCAGGGACTGCCCCTTTGGTGATAAGGCCCTCCTGGCGAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCAATGTGAGCTTTGGAGCATGTAAGCTGTTGGGTCAGAAAATGCCTAGACTCAATGTTGAAGTCATTGATGAAAGGGGACCTCCAGATTCAAGGCCAGAGAGTTGTCCCGTGGAGAAACTATACATATACAGGACCATAGCAGGACCGAGAATGGACATGCCTGGTTTTGTTTGGCGAATGGAAGGTGATTCTGCATTAAGAGTTTCGTGA 1755 0.4849 MRRIAYSFPEEVLEHVFSFIHSDQDRNAISLVCKSWYEIERWSRMSIFVGNCYAVSPMMVVKRFPKLRSISLKGKPHFADFNLVPEDWGGYACPWIEAMACAYPWLEEIRLKRMVITDESLELISKSLKNFQVLVLSSCEGFSTDGLASIAANCRNLRELDLRESEVDDLSGHWLSQFPDSFTSLVSLNISCLGSEVSICALERLLARCPNLLSLRLNRAVPLEKLVNLIGRSPNLVELGTGTYTSEMQPDVFSDLSRAFVGCKQLKSLCGFWDAMPYYLPAVYPISSRLTSLNLSYATTESPYLIKLVSGCQNLQRLWVLDYIEDSGLEALAASCKDLRELRVFPSDPFGLEPNVALTERGLVLVSEGCPKLQSVLYFCHQMSNAALVTIARNRPNMTRFRLCIIEPRKPDYLTLQPLDAGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGSYGKKLEMLSVAFAGDSDLGLHYVLSGCDSLRKLEVRDCPFGDKALLANAAKLETMRSLWMSSCNVSFGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTIAGPRMDMPGFVWRMEGDSALRVS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0368 584 SUPERFAMILY RNI-like 40 533 - -
Lele15g0368 584 SMART fbox_2 8 49 IPR001810 GO:0005515
Lele15g0368 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 85 536 - -
Lele15g0368 584 SMART LRR_CC_2 128 153 IPR006553 -
Lele15g0368 584 SMART LRR_CC_2 312 335 IPR006553 -
Lele15g0368 584 SMART LRR_CC_2 154 191 IPR006553 -
Lele15g0368 584 SMART LRR_CC_2 103 127 IPR006553 -
Lele15g0368 584 SMART LRR_CC_2 430 453 IPR006553 -
Lele15g0368 584 SMART LRR_CC_2 370 394 IPR006553 -
Lele15g0368 584 SMART LRR_CC_2 479 503 IPR006553 -
Lele15g0368 584 FunFam Transport inhibitor response 1 4 44 - -
Lele15g0368 584 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Lele15g0368 584 FunFam Transport inhibitor response 1 45 575 - -
Lele15g0368 584 Gene3D Ribonuclease Inhibitor 46 575 IPR032675 -
Lele15g0368 584 Pfam F-box 6 45 IPR041567 -
Lele15g0368 584 SUPERFAMILY F-box domain 7 44 IPR036047 GO:0005515
Lele15g0368 584 Gene3D - 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0368 Lele-ChrLele15 2104599 2107507 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele15g0368 15 2104599 2107507 Lele05g1539 05 9874483 9876797 CCT
Lele15g0368 15 2104599 2107507 Lele06g1388 06 8936451 8938770 CCT
Lele15g0368 15 2104599 2107507 Lele07g1596 07 9877797 9880097 CCT
Lele15g0368 15 2104599 2107507 Lele08g1385 08 8876433 8878750 CCT
Lele13g2038 13 27564466 27567538 Lele15g0368 15 2104599 2107507 hybridization
Lele14g1970 14 25904236 25907211 Lele15g0368 15 2104599 2107507 hybridization