Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0396 ATGGTTGATTGGCTTGTAAATTGGAATACAGATGATTGTATACAACTTTGCCTTCGCAATGATTGTCACGTGTGTGGGGGTGTATTATTACCCGAAAAGACAACTAAATCATGGACTGACAGGAGCGCTAAAGGCAACAAAACCTGGGAGCAGTGTCGAGAGAGAGTGCCAAAGATTTGTGAAGCGAGGCGAAGCAGAGCAGCGAAGATGACCCAACAAGAGAAAGACCACACAAACTCACTCGTTCCGTTGCTGTTGAGTGCTTTGAGAAAATCAATGGTGTCATGTCGGATGCATCCGCCCGACGATGTAATCTCGGCGTTCCCTCGGGACTTCGAAACTGGATGGCCCACCAACGTTCAGCACATCACTCATGTCACTTTCGATCGCTTCAATGGCTTCCTGGGTCTGCCTGCTGACCTCCAGCACGAGATTCCGGGTCGGGTTCCCAGCGCCAGTGCAAGTGTGTTTGGCGTCTCAGCGGAATCAATGCAGTGTTCCTATGATTCAAAAGGGAACAGTATCCCAACTATTCTGTTGTTAATGCAGGAGCGTTTATACTCACAGGGAGGCCTAAAGGCTGAAGGAATTTTTCGCATAAACCCAGAGAACAGCGAAGAGGAGAATTTGAGGGAGCAGTTGAATAGGGGGATTGTGCCGGACGACATTGATGTACATTGTTTGGCAGGCCTAATCAAGGCCTGGTTCCGAGAGCTCCCTTCGGGAATTCTAGATGGACTTTCTCCAGAGCAAGTTCTTAATTGCAATACAGAAGAAGAATACGTTGAACTTGTAAAGCAATTAAATCCCACCGAAGCTGCATTGCTCAACTGGTCTGTTGATCTCATGGCCGATGTTGTTGAACACGAAGAACACAACAAAATGAACGCAAGAAATATTGCCATGGTTTTTTCTCCCAACATGACTCAGATGTCCGATCCGCTAACTGCTCTGATGCATGCGGTCCAAGTGATGAACTTGCTCATGACTCTTATAATGAAGACGCTCACAGAACGTGAAGAAGCTGCAGGTTCACCCGCGTCGTTTCGTTCATCTGTGGATGAATATGAAAGTGAAGAAGAAATGGATACTAGTGATGACGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGTCGAACCATTATGTGAGATAGAAGAGGAATATGCCGTGTCATTTACTGAAAGCGAAACTAGGAAATCCAGTTCCAGTTCTTCATGCGAAGAAATGTCGGCGAGATCTAGTGTTGACACAGGTAACGGTGAGATAATTACTAAATTAACAGACACTTTGCCCGGTGCCTCCGTTTGCGTCTAG 1317 0.4677 MVDWLVNWNTDDCIQLCLRNDCHVCGGVLLPEKTTKSWTDRSAKGNKTWEQCRERVPKICEARRSRAAKMTQQEKDHTNSLVPLLLSALRKSMVSCRMHPPDDVISAFPRDFETGWPTNVQHITHVTFDRFNGFLGLPADLQHEIPGRVPSASASVFGVSAESMQCSYDSKGNSIPTILLLMQERLYSQGGLKAEGIFRINPENSEEENLREQLNRGIVPDDIDVHCLAGLIKAWFRELPSGILDGLSPEQVLNCNTEEEYVELVKQLNPTEAALLNWSVDLMADVVEHEEHNKMNARNIAMVFSPNMTQMSDPLTALMHAVQVMNLLMTLIMKTLTEREEAAGSPASFRSSVDEYESEEEMDTSDDEEEEEEEEEEEVEPLCEIEEEYAVSFTESETRKSSSSSSCEEMSARSSVDTGNGEIITKLTDTLPGASVCV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0396 438 ProSiteProfiles Rho GTPase-activating proteins domain profile. 159 340 IPR000198 GO:0007165
Lele16g0396 438 FunFam Rho GTPase-activating protein 5 144 337 - -
Lele16g0396 438 SUPERFAMILY GTPase activation domain, GAP 154 333 IPR008936 -
Lele16g0396 438 Gene3D Rho GTPase activation protein 142 349 IPR008936 -
Lele16g0396 438 SMART RhoGAP_3 173 336 IPR000198 GO:0007165
Lele16g0396 438 CDD CRIB 113 152 - -
Lele16g0396 438 MobiDBLite consensus disorder prediction 356 385 - -
Lele16g0396 438 Pfam RhoGAP domain 176 310 IPR000198 GO:0007165
Lele16g0396 438 SMART PBD_5 114 148 IPR000095 -
Lele16g0396 438 Coils Coil 358 378 - -
Lele16g0396 438 MobiDBLite consensus disorder prediction 339 438 - -
Lele16g0396 438 CDD RhoGAP 176 334 - -
Lele16g0396 438 Pfam P21-Rho-binding domain 115 147 IPR000095 -
Lele16g0396 438 PANTHER MKIAA1688 PROTEIN 47 415 IPR044785 GO:0005096
Lele16g0396 438 MobiDBLite consensus disorder prediction 395 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0396 Lele-ChrLele16 2156384 2162585 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1539 05 9874483 9876797 Lele16g0396 16 2156384 2162585 CCT
Lele13g2030 13 27530661 27532366 Lele16g0396 16 2156384 2162585 hybridization
Lele14g1964 14 25872304 25875551 Lele16g0396 16 2156384 2162585 hybridization