Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele15g0375 ATGACCCAACAAGACAAAGACCACAACAACTCACTCGTCCCGTTGCTGTTGAGTGCTTTGAGAAAATCAATGGTGTCATGTCGGATGCATCCACCCGACGATGTAATCTCGGCGGTCCCTCACGACTTAGAAACTGGATGGCCCACCAACGTTCAGCACATCACCCATGTCACTTTCGATCGCTCCAATGGCTTCCTGGGTCTGCCTGCCGAGCTCCAGCTCGAGATTCCGGGTCGGTTTCCCAGCGCCAGGAACCTTTACTTCTTGAAGGGTCGCGAACAAGCTCTTGTAAATTTGTCACGACTGGGAGTGTTTCTAATCACAGGGAGGCCTAAAGAGAACAGCGAAGAGGAGAATGTGAGGGAGCAGTTGAATAGTGGGATTGTGCCGGACGACATTGATGTACATTGTTTGGCTGGCCTAATCAAGGCCTGGTTCCGAGAGCTGCCTTCGGGAATTCTAGATGGACTTTCTCCAGAGCAAGTTCTTAACTGCAATACAGAAGAAGAACACGTTGAACTTGTAAAGCAATTAAAGCCCACTGAAGCTGCCTTGCTCAACTGGTCTGTTGATATCATGGCCGATGTTGTCGAACATGAAGAACACAACAAAATGAATGCAAGAAATATTGCCATGGTTTTCGCTCCAAACATGACTCAGATGTCCGATCCACTAACTGCTCTGATGCATGCGGTCCAAGTGATGAACTTGCTCATGACTCTTATAATGAAGACGCTGACAGAACGAGAAGAAGCGGCAGGTTCACCCACGTCGTTTCATTCATCCGAGGATGAATATGAAAGTGAAGAAGAAACGGAGATTAATGATGGCGAAGAGGAAGCCGAATCATTATGTGAGACAGAGGAATATGCTGTGCCATTCAGTGAAAGAGAAAGTAGGAAATCCAGTTCCAGTTGA 918 0.4749 MTQQDKDHNNSLVPLLLSALRKSMVSCRMHPPDDVISAVPHDLETGWPTNVQHITHVTFDRSNGFLGLPAELQLEIPGRFPSARNLYFLKGREQALVNLSRLGVFLITGRPKENSEEENVREQLNSGIVPDDIDVHCLAGLIKAWFRELPSGILDGLSPEQVLNCNTEEEHVELVKQLKPTEAALLNWSVDIMADVVEHEEHNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLMTLIMKTLTEREEAAGSPTSFHSSEDEYESEEETEINDGEEEAESLCETEEYAVPFSERESRKSSSS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele15g0375 305 SMART RhoGAP_3 76 246 IPR000198 GO:0007165
Lele15g0375 305 MobiDBLite consensus disorder prediction 291 305 - -
Lele15g0375 305 PANTHER MKIAA1688 PROTEIN 4 85 IPR044785 GO:0005096
Lele15g0375 305 CDD RhoGAP 103 244 - -
Lele15g0375 305 SMART PBD_5 45 79 IPR000095 -
Lele15g0375 305 Pfam RhoGAP domain 118 220 IPR000198 GO:0007165
Lele15g0375 305 ProSiteProfiles Rho GTPase-activating proteins domain profile. 70 250 IPR000198 GO:0007165
Lele15g0375 305 MobiDBLite consensus disorder prediction 250 305 - -
Lele15g0375 305 Pfam P21-Rho-binding domain 46 75 IPR000095 -
Lele15g0375 305 SUPERFAMILY GTPase activation domain, GAP 112 243 IPR008936 -
Lele15g0375 305 MobiDBLite consensus disorder prediction 264 286 - -
Lele15g0375 305 Gene3D Rho GTPase activation protein 92 252 IPR008936 -
Lele15g0375 305 Gene3D CRIB domain 41 74 IPR036936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele15g0375 Lele-ChrLele15 2145967 2147745 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1539 05 9874483 9876797 Lele15g0375 15 2145967 2147745 CCT
Lele13g2030 13 27530661 27532366 Lele15g0375 15 2145967 2147745 hybridization
Lele14g1964 14 25872304 25875551 Lele15g0375 15 2145967 2147745 hybridization