Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2038 ATGCGGAGAATCGCTTACTCCTTCCCCGAGGAAGTCCTCGAGCACGTCTTCTCCTTCATTCACTCCGACGAGGACCGTAACGCCATCTCCTTGGTCTGCAAGTCATGGTACGAGATCGAACGTTGGTCCAGGATGAGCATTTTCGTCGGCAACTGCTATGCTGTTAGCCCTATGATGGTGGTCAAACGCTTTCCCAAGCTGAGATCCATTTCGCTCAAAGGAAAGCCTCACTTTGCGGACTTCAATTTGGTTCCTGAGGACTGGGGTGGTTATGCCTGCCCTTGGATCGAAGCTATGGCTTGTGCCTATCCGTGGCTAGAGGAGATCCGGCTCAAGAGGATGGTCATAACGGACGAGAGCTTGGAGTTCATTTCTAAATCATGCAAAAACTTCCAAGTCTTGGTATTGTCCTCGTGTGAGGGATTCAGTTCGGATGGACTGGCTTCCATTGCTGCCAATTGCAGGAATTTAAGGGAGTTGGACTTGCGGGAGAGCGAAGTCGATGACCTTAGTGGGCATTGGCTAAGCGAGTTTCCTGATTCATTCACATCATTAGTTTCCCTTAACATCTCCTGCTTAGGTTCTGAGGTGAGTATATGTGCCCTAGAGCGCCTGCTGGCTAGGTGTCCCAACCTGCAGTCTCTTCGCCTCAACCGATCTGTGCCCCTTGAAAGGCTAGTCAACCTAATTGGTCGATCACCTAACTTGGTTGAGTTAGGCACAGGAACTTACACAAGTGAGATGCAACCTGATGTCTTCTCAGACCTATCCAGAGCTTTTGTAGGGTGTAAACAACTGAAGAGCTTATCTGGCTTTTGGGATGCAATGCCATACTACCTTCCAGCCGTCTATCCTATCTCTTCCAGGCTTACTTCACTAAACTTGAGTTATGCTACTACTGAGAGCCCCTATCTCATCAAGCTTGTTAGTGAATGCCAGAATTTGCAGCGTTTATGGGTGCTGGATTTCATAGAAGATTCTGGCCTGGAAGCCCTTGCTGCATCATGCAAGGATTTGAGGGAGTTGAGGGTGTTTCCATCTGAACCATTTGGGTTAGAACCAAATGTTGCATTGACAGAAAGGGGCCTTGTTTTGGTGTCTGAAGGCTGCCCCAAGCTCCAGTCAGTTCTCTATTTCTGTCGCCAAATGTCTAATGCTGCCCTAGTTACAATTGCCAGGAACCGGCCTAACATGACTCGGTTTCGCCTTTGTATTATTGAGCCCCGAAAGCCTGACTACCTTACTCTTCAACCACTGGATGCTGGCTTTGGAGCAATTGTAGAGCATTGCAAGGACCTTCGACGCCTGTCCCTTTCTGGTCTTCTTACAGATCGTGTTTTTGAGTACATTGGAAGTTATGGGAAGAAGCTTGAGATGCTTTCGGTGGCTTTTGCTGGAGATAGTGATCTGGGGCTTCATTATGTACTGTCTGGGTGTGACAGCCTTAGGAAGCTGGAGGTCAGGGACTGCCCCTTTGGTGACAAGGCCCTCCTGGCGAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCAACGTGAGCTTTGGAGCATGTAAGCTGTTGGGTCAGAAAATGCCTAGACTCAATGTTGAAGTCATTGATGAAAGGGGACGTCCAGATTCAAGGCCAGAGAGTTGTCCCGTGGAGAAACTATACATATACAGGACCATAGCAGGACCGAGAATGGACATGCCTGGTTTTGTTTGGCGAATGGAAGGTGATTCTGCATTAAGAGTTTCGTGA 1755 0.4866 MRRIAYSFPEEVLEHVFSFIHSDEDRNAISLVCKSWYEIERWSRMSIFVGNCYAVSPMMVVKRFPKLRSISLKGKPHFADFNLVPEDWGGYACPWIEAMACAYPWLEEIRLKRMVITDESLEFISKSCKNFQVLVLSSCEGFSSDGLASIAANCRNLRELDLRESEVDDLSGHWLSEFPDSFTSLVSLNISCLGSEVSICALERLLARCPNLQSLRLNRSVPLERLVNLIGRSPNLVELGTGTYTSEMQPDVFSDLSRAFVGCKQLKSLSGFWDAMPYYLPAVYPISSRLTSLNLSYATTESPYLIKLVSECQNLQRLWVLDFIEDSGLEALAASCKDLRELRVFPSEPFGLEPNVALTERGLVLVSEGCPKLQSVLYFCRQMSNAALVTIARNRPNMTRFRLCIIEPRKPDYLTLQPLDAGFGAIVEHCKDLRRLSLSGLLTDRVFEYIGSYGKKLEMLSVAFAGDSDLGLHYVLSGCDSLRKLEVRDCPFGDKALLANAAKLETMRSLWMSSCNVSFGACKLLGQKMPRLNVEVIDERGRPDSRPESCPVEKLYIYRTIAGPRMDMPGFVWRMEGDSALRVS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2038 584 FunFam Transport inhibitor response 1 4 44 - -
Lele13g2038 584 FunFam Transport inhibitor response 1 45 575 - -
Lele13g2038 584 SUPERFAMILY F-box domain 7 44 IPR036047 GO:0005515
Lele13g2038 584 Gene3D Ribonuclease Inhibitor 46 575 IPR032675 -
Lele13g2038 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 8 162 - -
Lele13g2038 584 SMART fbox_2 8 49 IPR001810 GO:0005515
Lele13g2038 584 Pfam F-box 6 45 IPR041567 -
Lele13g2038 584 Gene3D - 1 44 - -
Lele13g2038 584 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Lele13g2038 584 SUPERFAMILY RNI-like 33 533 - -
Lele13g2038 584 SMART LRR_CC_2 370 394 IPR006553 -
Lele13g2038 584 SMART LRR_CC_2 154 191 IPR006553 -
Lele13g2038 584 SMART LRR_CC_2 128 153 IPR006553 -
Lele13g2038 584 SMART LRR_CC_2 312 335 IPR006553 -
Lele13g2038 584 SMART LRR_CC_2 430 453 IPR006553 -
Lele13g2038 584 SMART LRR_CC_2 103 127 IPR006553 -
Lele13g2038 584 SMART LRR_CC_2 479 503 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2038 Lele-ChrLele13 27564466 27567538 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2038 13 27564466 27567538 Lele05g1539 05 9874483 9876797 CCT
Lele13g2038 13 27564466 27567538 Lele06g1388 06 8936451 8938770 CCT
Lele13g2038 13 27564466 27567538 Lele07g1596 07 9877797 9880097 CCT
Lele13g2038 13 27564466 27567538 Lele08g1385 08 8876433 8878750 CCT
Lele13g2038 13 27564466 27567538 Lele15g0368 15 2104599 2107507 hybridization
Lele13g2038 13 27564466 27567538 Lele16g0389 16 2122707 2125779 hybridization