Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g2030 ATGACCCAACAAGACAAAGACCACATCAACTCAATCGTCCCGTTGCTGTTGAGTGCTTTGAGAAAATCAAGGGTGTCATGTCCGATGCATCCACCCGCCGATGTAATCTCGGCGGTCCCTCACGACTTCGAAACTGGATGGCCCACCAACGTTCAGCACATCACCCACGTCACTTTCGATCGTTCCAATGGCTTCCTGGGTCTGCCTGCCGAGCTCCAGCTCGAGATTCCGGGTCGGTTTCCCAGCGCCAGGGCATATATACATGGAGCGTTTATACTTCCAGGGAGGCCTAAAGGTGCCAGCTTTATTAATTATAGTTATAAATGCGTACATGTATATACATGTGTAGACGATTACAAAAACCCAGAGAACAGCGAAGAGGACAATGTGAGGGAGCAGTTGAATAGTGGGATTGTGCCGGACGACATTGATGTACATTGTCTGGCAGGCATAATCAAGGCGTGGTTTCGAGAGCTGCCTTCGGGAATTCTAGATGGACTTTCTCCAGAGCAAGTTCTTAACTGCAATACAGAAGAAGAACACGTTGAACTTGCAAAGCAATTAAAGCCCACCGAAGCTGCCTTGCTCATCTGGCCTGTTGATATCATGGCCGATGTTGTTGAACATGAACAACACAACAAAATGAATGCAAGAAATATTGCCATGGTTTTCGCTCCAAACATGACTCAGACGCTCACAGAACGAGAAGAAGCGGCAGGCTCACCCACGTCGTTTCATTCATCCGAGGATGAATATGAAAGTGAAGAAGAAACGGAGATTCGTGATGGCGAAGAGGAAGGGAAGAGGAAGCCGAATCATTATGTGAGAGGAATATGCTGTGTCATTCACTGA 852 0.4754 MTQQDKDHINSIVPLLLSALRKSRVSCPMHPPADVISAVPHDFETGWPTNVQHITHVTFDRSNGFLGLPAELQLEIPGRFPSARAYIHGAFILPGRPKGASFINYSYKCVHVYTCVDDYKNPENSEEDNVREQLNSGIVPDDIDVHCLAGIIKAWFRELPSGILDGLSPEQVLNCNTEEEHVELAKQLKPTEAALLIWPVDIMADVVEHEQHNKMNARNIAMVFAPNMTQTLTEREEAAGSPTSFHSSEDEYESEEETEIRDGEEEGKRKPNHYVRGICCVIH 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g2030 283 Gene3D Rho GTPase activation protein 118 267 IPR008936 -
Lele13g2030 283 Gene3D CRIB domain 41 74 IPR036936 -
Lele13g2030 283 PANTHER MKIAA1688 PROTEIN 5 89 IPR044785 GO:0005096
Lele13g2030 283 Pfam RhoGAP domain 130 230 IPR000198 GO:0007165
Lele13g2030 283 SUPERFAMILY GTPase activation domain, GAP 120 233 IPR008936 -
Lele13g2030 283 MobiDBLite consensus disorder prediction 234 270 - -
Lele13g2030 283 CDD RhoGAP 120 228 - -
Lele13g2030 283 SMART RhoGAP_3 87 283 IPR000198 GO:0007165
Lele13g2030 283 Pfam P21-Rho-binding domain 46 74 IPR000095 -
Lele13g2030 283 SMART PBD_5 45 79 IPR000095 -
Lele13g2030 283 ProSiteProfiles Rho GTPase-activating proteins domain profile. 70 261 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g2030 Lele-ChrLele13 27530661 27532366 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1539 05 9874483 9876797 Lele13g2030 13 27530661 27532366 CCT
Lele13g2030 13 27530661 27532366 Lele15g0375 15 2145967 2147745 hybridization
Lele13g2030 13 27530661 27532366 Lele16g0396 16 2156384 2162585 hybridization