Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele16g0389 ATGCGGGGAATCGCTTACTCCTTCCCCGAGGAAGTCCTCGAGCACGTCTTCTCCTTCATTCACCCCGACCAGGACCGCAACGCCATCTCCTTGGTCTGTAAGTCATGGTACGAGATCGAACGTTGGTGCAGGAGGAGCATTTTCGTCGGCAACTGCTATTCTGTTAGCCCTATGATGGCGGTCAAACGTTTTCCCAAGCTGAGATCCATTTCGCTCAAAGGAAAGCCTCACTTTGCGGACTTCAATTTGGTTCCTGAGGACTGGGGTGGTTATGCCTGCCCTTGGATCGAAGCTATGGCTAGTGCCTATCCGTGGCTAGAGGAGATCAGGCTCAAGAGGATGGTCATAACGGATGAGAGCTTGGAGCTCATTTCTAAATCATTCAAAAACTTCAAAGTCTTGGTATTGTCCTCGTGTGAGGGATTCAGTACCGATGGACTGGCTTCCATTGCTGCCAATTGCAGGAATTTAAGGGAGTTGGACTTGCGGGAGAGCGAAGTGGATGACCTTGGTGGGCATTGGCTAAGCCAGTTTCCTGATTCATTCACATCTTTAGTTTCCCTTAACATCTCCTGCTTAGGTTCTGAGGTGAGTATATGTGTCCTAGAGCGCCTGCTGGCTAGGTGTCCCAACCTGCAGTCTCTTCGCCTCAACCGTGCTGTGCCCCTTGAAAGGCTAGTCAACCTAATTGGTCGGTCACCTAACTTGGTTGAGTTAGGCACAGGAACTTACACAAGTGAGATGCAACCTGATGTCTTCTCAGACCTATCAAGAGCTTTTGTAGGGTTTAAACAACTGAAGAGCTTATCTGGCTTTTGGGATGCAATGCCATACTACCTTCCAGCTGTCTATCCTATCTCTTCCAGGCTTACTTCACTAAACTTGAGTTATGCTACTACTGAGAGCCCCTATCTCATCAAGCTTGTCAGTGAATGCCAGAATTTGCAGCGTTTATGGGTTCTGGATTACATAGAAGATTCTGGCCTGGAAGCCCTTGCTGCATCGTGCAAGGATTTGAGGGAGTTGAGGGTGTTTCCATCTGATCCATTTGGGTTAGAACCTAATGTTGCATTGACAGAAAGGGGCCTTGTTTCTGTGTCTGAAGGCTGTCCCAAGCTCCAGTCAGTTCTCTATTTCTGTCGCCAAATGTCTAATGCTGCCCTAGTTATGATTGCCAGGAACCGGCCTAACATGACTCGGTTTCGCCTGTGTATTATTGATCCCCAAAAGCCTGACTACCTTACTCTTCAACCACTGGATGCTGGCTTTGGAGCAATTGTAGAGCATTGCAAGGACCTTCAACGCCTATCCCTTTCTGGTCTTCTTACAGATCGTGTGTTTGAGTACATTGGAAATTATGGGAAGAAGCTTGAGATGCTCTCTGTGGCTTTTGCTGGAGATAGTGATCTGGGGCTTCATTATGTACTGTCTGGGTGTGACAGCCTTAGGAAGCTGGAGGTCAGGGACTGCCCCTTTGGTGATAAGGCCCTCCTGGCGAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCAATGTGAGCTTTGGAGCATGTAAGCTGTTGGGTCAGAAAATGCCTAGACTCAACGTTGAAGTCATTGATGAAAGGGGACCTCCAGATTCAAGGCCAGAGAGTTGTCCCGTGGAGAAACTATATATATACAGGACCATAGCAGGACCGAGAATGGACATGCCTGGTTTTGTTTGGCGAATGGAAGGTGATTCTTCATTAAGAGTTTCGTGA 1755 0.4821 MRGIAYSFPEEVLEHVFSFIHPDQDRNAISLVCKSWYEIERWCRRSIFVGNCYSVSPMMAVKRFPKLRSISLKGKPHFADFNLVPEDWGGYACPWIEAMASAYPWLEEIRLKRMVITDESLELISKSFKNFKVLVLSSCEGFSTDGLASIAANCRNLRELDLRESEVDDLGGHWLSQFPDSFTSLVSLNISCLGSEVSICVLERLLARCPNLQSLRLNRAVPLERLVNLIGRSPNLVELGTGTYTSEMQPDVFSDLSRAFVGFKQLKSLSGFWDAMPYYLPAVYPISSRLTSLNLSYATTESPYLIKLVSECQNLQRLWVLDYIEDSGLEALAASCKDLRELRVFPSDPFGLEPNVALTERGLVSVSEGCPKLQSVLYFCRQMSNAALVMIARNRPNMTRFRLCIIDPQKPDYLTLQPLDAGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGNYGKKLEMLSVAFAGDSDLGLHYVLSGCDSLRKLEVRDCPFGDKALLANAAKLETMRSLWMSSCNVSFGACKLLGQKMPRLNVEVIDERGPPDSRPESCPVEKLYIYRTIAGPRMDMPGFVWRMEGDSSLRVS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele16g0389 584 SMART LRR_CC_2 430 453 IPR006553 -
Lele16g0389 584 SMART LRR_CC_2 154 191 IPR006553 -
Lele16g0389 584 SMART LRR_CC_2 312 335 IPR006553 -
Lele16g0389 584 SMART LRR_CC_2 103 127 IPR006553 -
Lele16g0389 584 SMART LRR_CC_2 370 394 IPR006553 -
Lele16g0389 584 SMART LRR_CC_2 479 503 IPR006553 -
Lele16g0389 584 SMART LRR_CC_2 128 153 IPR006553 -
Lele16g0389 584 SUPERFAMILY F-box domain 6 42 IPR036047 GO:0005515
Lele16g0389 584 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Lele16g0389 584 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Lele16g0389 584 FunFam Transport inhibitor response 1 4 44 - -
Lele16g0389 584 Gene3D - 2 44 - -
Lele16g0389 584 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 85 536 - -
Lele16g0389 584 Pfam F-box 6 45 IPR041567 -
Lele16g0389 584 SMART fbox_2 8 49 IPR001810 GO:0005515
Lele16g0389 584 FunFam Transport inhibitor response 1 45 575 - -
Lele16g0389 584 SUPERFAMILY RNI-like 36 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele16g0389 Lele-ChrLele16 2122707 2125779 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele16g0389 16 2122707 2125779 Lele05g1539 05 9874483 9876797 CCT
Lele16g0389 16 2122707 2125779 Lele06g1388 06 8936451 8938770 CCT
Lele16g0389 16 2122707 2125779 Lele07g1596 07 9877797 9880097 CCT
Lele16g0389 16 2122707 2125779 Lele08g1385 08 8876433 8878750 CCT
Lele13g2038 13 27564466 27567538 Lele16g0389 16 2122707 2125779 hybridization
Lele14g1970 14 25904236 25907211 Lele16g0389 16 2122707 2125779 hybridization