Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal22g0577 ATGTCATCTGCTGGTTTAAGCACTCTTAGCCCCGTTCCAAGGGAGCCATTGTTGTTTCCAAATGGATTTCATACTCCACTTCACTTGGATTTGGATTATGAATCCATTTTCATATATCTCTCCTTCTCGGGGTCATTGACTCCGATGCGTGTTCTACCTTATGATACCATTGAGTCGGTAAAGCTCAAAATCAAAAAGAGTGAAGGGCTTCCTTTATTGACAAACAAGCAAAAATTGGTATGTGGCGGACGAGAGCTAGCACGGAGCAATTCTCTGCTCAAGGACTATGGGGTTACAGAAGGGAATGTTTTGCATTTGGTTATCAGGCCTACGGATCTTCAGACCATCAATGTGAGAACTTCTTGTGGGAAGGAGTTTTCGTTTCAGGTGGAAAGATGTAGGGATGTTGGGTATGTCAAGCAGCAGATTGCGAAAAAGGAAAAGCGGTTTGCTCATCTTGAACAGCAGGAAGTTGTGTGTAATGGGGAACCTCTTGAGGACCAATGGCTTATTGATGATATCTGCAGCAAATATAATGATGTAGTGATACATCTTTTTGTTAGAGAGAAATATGCAGAAGTTAAGACTGGAATCGATGAGTTGTCTATTGTGGCTACAAAATTAAATGATAGGAAAAATAATGATGTTGATGGAGACAATTATAGGAGAAAATTTGATGCCAGTAAAGAAGATTCAAGGGAATATGAAGCAGTCGAGCAAATTGTGCCAAGAATATCTCTTGATAGAAATATTCTGTTGGAGCCAGTTATTGTTAACCCCAAAGTTGAATTAGCTCCAGAGATTTGGAATATGATAAACTCTTCATATGATGGACTGGATAGTGGAAATTATCCCATCAGATCTGCAGAGGGTACTGGAGGAGCTTACTTTATGCTTGATTCCACGGGGCAAAAGTGTGTATCTGTTTTTAAGCCTATTGACGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTGCCTTTGTCATTAGATGGTGAAGGCTTGAAAAAGGGTACAACCGTTGGTCAAGGAGCATTCAGGGAGGTTGCAGCTTATATTTTGGACCACCCAATCAGTGGACGTCGTTCATTATTTGGTGATGAGAAAGGCTTTGCTGGGGTTCCCCCAACTGCTATGGTTAAATGCTTGCATAAAGGATTTAACCATCCAGAGGACTTCACTGCTAAGATCGGTTCTTTGCAATTGTTCATGGAGAACAGTGGAAGTTGTGAAGATATGGGCCCTGGGGCTTTCCCAGTGAAGGAAGTTCATAAAATTACTGTGTTAGACCTGAGACTGGCGAATGCCGATAGGCATGCTGGGAATATTTTGATCAGCAAAGAGGGGGAAAATGATCAGGCTATTCTGATTCCAATTGACCATGGCTACTGCTTGCCCACAAGTTTTGAGGATTGTACCTTTGAATGGCTTTATTGGCCTCAAGCTCGCCAACCATACTCCCCAGAGACTGTTGACTATATAAAATCACTGGATGCTGAAGAAGATATTGCACTTTTAAAGTTTCATGGATGGGATCTGCAAGTTGAATGCGCCCGCACTCTACAAATCTCAACCATGCTTCTGAAGAAAGGAGTGGATAGAGGGATGACTCCCTTTGCCATTGGAAGCCTGATGTGCAGAGAATCCTTGAACAAAGACTCAGTGATTGAGGGAATTGTCCAAGAAGCACTGGATTCTGTTCTTCCTAGCACAAGTGAAGCTACATTTCTGGATGCCGTTTCCTACATCATGGACCAGCGCCTTGATGAGATTGTCAATTCTATCTCTTGA 1791 0.4232 MSSAGLSTLSPVPREPLLFPNGFHTPLHLDLDYESIFIYLSFSGSLTPMRVLPYDTIESVKLKIKKSEGLPLLTNKQKLVCGGRELARSNSLLKDYGVTEGNVLHLVIRPTDLQTINVRTSCGKEFSFQVERCRDVGYVKQQIAKKEKRFAHLEQQEVVCNGEPLEDQWLIDDICSKYNDVVIHLFVREKYAEVKTGIDELSIVATKLNDRKNNDVDGDNYRRKFDASKEDSREYEAVEQIVPRISLDRNILLEPVIVNPKVELAPEIWNMINSSYDGLDSGNYPIRSAEGTGGAYFMLDSTGQKCVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTTVGQGAFREVAAYILDHPISGRRSLFGDEKGFAGVPPTAMVKCLHKGFNHPEDFTAKIGSLQLFMENSGSCEDMGPGAFPVKEVHKITVLDLRLANADRHAGNILISKEGENDQAILIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPETVDYIKSLDAEEDIALLKFHGWDLQVECARTLQISTMLLKKGVDRGMTPFAIGSLMCRESLNKDSVIEGIVQEALDSVLPSTSEATFLDAVSYIMDQRLDEIVNSIS 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal22g0577 596 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Lal22g0577 596 CDD Ubl_ubiquitin_like 116 186 - -
Lal22g0577 596 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 595 - -
Lal22g0577 596 SUPERFAMILY Ubiquitin-like 109 189 IPR029071 -
Lal22g0577 596 Pfam Ubiquitin family 38 110 IPR000626 GO:0005515
Lal22g0577 596 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Lal22g0577 596 Gene3D - 115 191 - -
Lal22g0577 596 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 595 IPR044571 -
Lal22g0577 596 SUPERFAMILY Ubiquitin-like 34 110 IPR029071 -
Lal22g0577 596 Pfam Phosphatidylinositol 3- and 4-kinase 291 540 IPR000403 -
Lal22g0577 596 SMART ubq_7 36 109 IPR000626 GO:0005515
Lal22g0577 596 SMART ubq_7 114 188 IPR000626 GO:0005515
Lal22g0577 596 Gene3D - 35 114 - -
Lal22g0577 596 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Lal22g0577 596 SUPERFAMILY Protein kinase-like (PK-like) 431 591 IPR011009 -
Lal22g0577 596 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 575 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal22g0577 Lal-Chr22 3948468 3951339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal22g0577 1 590 Acyl Lipid Metabolism Gene Families AT5G24240 53.512 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal22g0577 - - gmx:100815111 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g0577 22 3948468 3951339 Lal17g0563 17 4010701 4014851 ECH
Lal22g0577 22 3948468 3951339 Lal22g0577 22 3948468 3951339 ECH
Lal22g0577 22 3948468 3951339 Lal3g1551 3 21271066 21274425 ECH
Lal16g0071 16 430092 433000 Lal22g0577 22 3948468 3951339 ECH
Lal15g1455 15 16768484 16771804 Lal22g0577 22 3948468 3951339 ECH
Lal16g1146 16 7819956 7827176 Lal22g0577 22 3948468 3951339 ECH
Lal23g1558 23 15637302 15642355 Lal22g0577 22 3948468 3951339 ECH
Lal22g0577 22 3948468 3951339 Lal6g0576 6 3699494 3708334 LSH
Lal6g0637 6 4151671 4154787 Lal22g0577 22 3948468 3951339 LSH
Lal22g0577 22 3948468 3951339 Lal18g0289 18 2366084 2369088 LSH
Lal5g0044 5 509648 513948 Lal22g0577 22 3948468 3951339 PCT
Lal3g1551 3 21271066 21274425 Lal22g0577 22 3948468 3951339 PCT
Lal18g0289 18 2366084 2369088 Lal22g0577 22 3948468 3951339 PCT
Lal22g0577 22 3948468 3951339 Lal5g0044 5 509648 513948 PCT
Lal22g0577 22 3948468 3951339 Lal3g1551 3 21271066 21274425 PCT
Lal22g0577 22 3948468 3951339 Lal18g0289 18 2366084 2369088 PCT