Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1558 ATGTCGGTTGCTGATGTTGCATTAACACCGATTTTCAAAGAATCGGTACATTGGCAAAACCAACAATTAGGATTAGAAACTTACCCCGGTGAATCCATCCTTATATATCTTACTGTAAACGGAGCTGTGACCCCAATGCGTGTTTTGGAGTCTGATTCCATTGCCTCAGTGAAAATGAGGATTCAGACATGCAAAGGAATTTTAGGCAACAGGAAGAAGCAGAAGCTAGTTGCTGGTGGCAGAGAGCTAGCAAGAAATGATTCACTCATCAAGGATTATGGTGTCACTGCTGGCAATGTTCTTCACTTAGTTCTCCATCTCTCAAATCTTATCTTCATTGTTGTGAGGACTACCTGTGGGAAAGAGTTTGAGTTTCAGATTGATAGGCACAGAAATGTAAGGTATCTTAAGCAACATATCAAAAATAAAGGGAAAGATTTTGTTAGTGTTGAGGATCAAGAGTTTTTTCGCGATGGCGAAAAGCTTGATGACCAGAAATTGTTCCATGACTTATGCAAGACTGGTGATGATGTGATTCATTTGGTTATTAAGGAATCAGCAGAAGTTAAGGCTACCCCAATTCATAAAGATGTGGAGCTTTCGGTTGTGGCAGACACTAGAGTTGGTGGTGTTGGTGTAGGACAGAATCAGATTCAGATACCAGCTGGTGTAGATTTCTGGTTGGAACCAATTATTGTAAATCCTAAGATCAATATTTCTCCTTTCCTTCAGGACATGATTAGGTCCACATTTGATGGTTTGCAAAAAGGGAATCATCCTATCAGGTCTTCTGAAGGCACAGGTGGGACTTACTTCATGCAAGATTCAACAGGAATGGAATATGTTTCTGTTTTTAAGCCGATAGACGAGGAGCCGATGGCAGTGAACAACCCACATGGCCTACCGATTTCGTCTAATGGTGAAGGCTTGAAAAGAGGGACAAAAGTGGGAGAAGGAGCTTTTAGAGAAGTTGCAGCCTATGTTTTAGATCATCCAAAGGCTGGGAGGCGTTTGGTGTCTGGTGAAGCAATAGGCTTCGCTGGTGTCCCACCAACTGCTATGGTTAAGTGCTTGGACAAAACATTTAACCATCCAGAAGGGTATGATTGCTCATCCAAGCACTTCAAAATGGGGTCATTGCAGGTGTTTATGAACAATGATGGTAACTGTGAGGACCTAGGACCAGGGGCTTTTTCTGTGGAGGAGGTGCATAAGATTACTGTGCTTGATATAAGGATGGCTAATGCAGATAGGCATGCTGGGAATATATTGTTCAAAAGAGAAGCTGGTGGCAAAACTTTGCTCATTCCTATTGATCATGGTTACTGCCTACCCGAGAAATTTGAAGATTGCACATTTGACTGGCTTTACTGGCCCCAAGCATCCCAGCCATACTCTCCTGACACAGTTGATTATATAAAATCTCTAGATGCTGAAGAAGATCTAGAACTTCTGACATACTATGGGTGGGATGTTCCACTTGAGTGTGCAAGAACGCTACGCATCTCCACAATGTTGTTGAAGAAAGGTGTTGAGAGAGGTTTCACACCCTATGCCATTGGAAGCATTATGTGTAGGGAAAATTTGAACAAGGAATCTGTAATTGAAGAGATTATTTGTGAAGCCCAGGAATCATTGCTACCAGGCTATGCAGAATCTAAATTTCTTGAATCTGTCTCACGGATCATGAATTCCCGCCTTGAGAAGCTAAGAAAATAG 1719 0.42 MSVADVALTPIFKESVHWQNQQLGLETYPGESILIYLTVNGAVTPMRVLESDSIASVKMRIQTCKGILGNRKKQKLVAGGRELARNDSLIKDYGVTAGNVLHLVLHLSNLIFIVVRTTCGKEFEFQIDRHRNVRYLKQHIKNKGKDFVSVEDQEFFRDGEKLDDQKLFHDLCKTGDDVIHLVIKESAEVKATPIHKDVELSVVADTRVGGVGVGQNQIQIPAGVDFWLEPIIVNPKINISPFLQDMIRSTFDGLQKGNHPIRSSEGTGGTYFMQDSTGMEYVSVFKPIDEEPMAVNNPHGLPISSNGEGLKRGTKVGEGAFREVAAYVLDHPKAGRRLVSGEAIGFAGVPPTAMVKCLDKTFNHPEGYDCSSKHFKMGSLQVFMNNDGNCEDLGPGAFSVEEVHKITVLDIRMANADRHAGNILFKREAGGKTLLIPIDHGYCLPEKFEDCTFDWLYWPQASQPYSPDTVDYIKSLDAEEDLELLTYYGWDVPLECARTLRISTMLLKKGVERGFTPYAIGSIMCRENLNKESVIEEIICEAQESLLPGYAESKFLESVSRIMNSRLEKLRK 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1558 572 SUPERFAMILY Protein kinase-like (PK-like) 413 570 IPR011009 -
Lal23g1558 572 Pfam Ubiquitin family 40 107 IPR000626 GO:0005515
Lal23g1558 572 Pfam Ubiquitin family 113 185 IPR000626 GO:0005515
Lal23g1558 572 Gene3D - 112 199 - -
Lal23g1558 572 SUPERFAMILY Ubiquitin-like 103 185 IPR029071 -
Lal23g1558 572 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 257 554 IPR000403 -
Lal23g1558 572 ProSiteProfiles Ubiquitin domain profile. 111 188 IPR000626 GO:0005515
Lal23g1558 572 Gene3D - 37 109 - -
Lal23g1558 572 ProSiteProfiles Ubiquitin domain profile. 35 110 IPR000626 GO:0005515
Lal23g1558 572 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 572 - -
Lal23g1558 572 CDD Ubl_ubiquitin_like 113 182 - -
Lal23g1558 572 SMART ubq_7 111 184 IPR000626 GO:0005515
Lal23g1558 572 SMART ubq_7 33 106 IPR000626 GO:0005515
Lal23g1558 572 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 572 IPR044571 -
Lal23g1558 572 SUPERFAMILY Ubiquitin-like 37 108 IPR029071 -
Lal23g1558 572 Pfam Phosphatidylinositol 3- and 4-kinase 266 519 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1558 Lal-Chr23 15637302 15642355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1558 1 569 Acyl Lipid Metabolism Gene Families AT5G24240 56.294 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1558 - - gmx:100787492 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1558 23 15637302 15642355 Lal23g1558 23 15637302 15642355 ECH
Lal23g1558 23 15637302 15642355 Lal6g0637 6 4151671 4154787 ECH
Lal23g1558 23 15637302 15642355 Lal18g0289 18 2366084 2369088 ECH
Lal23g1558 23 15637302 15642355 Lal22g0577 22 3948468 3951339 ECH
Lal23g1558 23 15637302 15642355 Lal3g1551 3 21271066 21274425 ECH
Lal23g1558 23 15637302 15642355 Lal5g0044 5 509648 513948 ECH
Lal23g1558 23 15637302 15642355 Lal18g1036 18 13348093 13352155 ECH
Lal16g0071 16 430092 433000 Lal23g1558 23 15637302 15642355 LSH
Lal23g1558 23 15637302 15642355 Lal16g1146 16 7819956 7827176 PCT
Lal23g1558 23 15637302 15642355 Lal15g1455 15 16768484 16771804 PCT