Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0563 ATGGCATGCGTGGTACTTCGTCCAGTGCATGACGAATCTTTTAACCCAGACTGTTTTAGTCCTCATTTAAGGGACTCGATTTTGATTTACCTAACTGTTGGTGGATCTGTGATTCCCATGCATATTAAGGATACAGATTCAATTGCTTCAGTGAAGCTGAGGATTCAAACCTTCAAAGGATTTTTTGTAAAGAAACAGAAACTAGTTTTTGAAGGGAAGGAGTTGGCTCGCAACAAATCTTGTATCCGTGATTATGGTGTTGCTGATGGGAATGTGTTGCACCTGGTGCTAAGGCTTTCTGATCTTCAAGCTATCACTGTTACGACAGTAGGTGGAAAGGAGTTTGGATTTTATGTTGAGAAGACTAGGAATGTGGGTTATGTGAAGCAGAAAATTGCAAGTAAATCGAAAGGGTTCGTGGATCTCAAGGATCAGGAATTGATATGTGATGGTAAGGCACTTGAAGACCAGAGGCTCATTGGGGATATCTGTAAGCACAATGATGCTGTAATTCATCTTTTGGTCAGGATTTCAGATGCCAAGGTAAGGACTAAACCAGTTGAGAAGGATTTTGAGTTGTCAATTGAGGCATCATCCACAGACAATACGGTGACCAACTTAGGCACAGACCAGTTAGGGTCAGTGTCCATAACAAATGAGGTCCCACAGAGGAACCAATTGACAGGAGATTTTCTTTTGGAACCAATTATTGTGAATTCCAATATCAGAATTCCACCAGTGATCCAGGAGCTAATTAAGATTACTTCTGAGGGGTTAGAAAAAGGCAGTAAACCAATTCAATCTTCGGAGGGATCCGGAGGAGCTTACCTCATGCAAGATTCATCTGGCTTAAAGTATGTTTCTGTTTTCAAGCCTATTGATGAGGAGCCAATGGCTATTAATAATCCTCGAGGCTTACCTGTCTCTGTGGATGGTGAAGGGTTAAAGAAAGGGACACGAGTAGGGCAAGGTGCATTGAGAGAAGTTGCAGCCTACATTTTGGACCATCCTAGGAAAGGACCTCGCTTATGTCATGACAAAGAGTTGCAGGGTTTTGCTGGAGTCCCTCCTACCGTCATGGTCAAATGCTTGCATGAAGGGTTCCATCATCCTGGTGGTTATAAAAATGTTTCTGGTAATGTTAAAATAGGATCACTTCAGATGTTTATGAGGAATATTGGAAGTTGTGAAGATATGGGCCCTGGTGCATTTCCAGTGGAAGAGGTACACAAGATCTCTGTGCTAGATATGAGATTGGCAAATGCAGATAGGCATGCTGGTAACATTTTGGTTGCCAAGGATGGTGTAGATGGTCGTACTGTGCTTATTCCAATTGATCATGGCTATTGCTTGCCTGAGAGCTTTGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTAAGGAACCATACTCCCCTGACACCATTGACTACATAAAATCTCTGGATGCTGAAGAAGACATTAAGCTTTTGAAGTCTCTTGGGTGGGACCTTCCTCCCAAATGTGCTCGCATCCTCCGTATATCAACCATGCTACTTAAGAAAGGTGCAGAGCAAGGACTCACTCCTTTCAACATCGGGAGCATCATGTGTAGAGAAACACTGAAGAAAAAATCTGTCATTGAGCAGATTATTCAGGAAGCAGAGGAAGCTGCACTTCCCGGAACAAGTGAAGCCGAGTTTCTTGATCTTGTTTCAGTGATCATGGATAATCACTTGGAAAAGCTATTCCCATGA 1740 0.427 MACVVLRPVHDESFNPDCFSPHLRDSILIYLTVGGSVIPMHIKDTDSIASVKLRIQTFKGFFVKKQKLVFEGKELARNKSCIRDYGVADGNVLHLVLRLSDLQAITVTTVGGKEFGFYVEKTRNVGYVKQKIASKSKGFVDLKDQELICDGKALEDQRLIGDICKHNDAVIHLLVRISDAKVRTKPVEKDFELSIEASSTDNTVTNLGTDQLGSVSITNEVPQRNQLTGDFLLEPIIVNSNIRIPPVIQELIKITSEGLEKGSKPIQSSEGSGGAYLMQDSSGLKYVSVFKPIDEEPMAINNPRGLPVSVDGEGLKKGTRVGQGALREVAAYILDHPRKGPRLCHDKELQGFAGVPPTVMVKCLHEGFHHPGGYKNVSGNVKIGSLQMFMRNIGSCEDMGPGAFPVEEVHKISVLDMRLANADRHAGNILVAKDGVDGRTVLIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSPDTIDYIKSLDAEEDIKLLKSLGWDLPPKCARILRISTMLLKKGAEQGLTPFNIGSIMCRETLKKKSVIEQIIQEAEEAALPGTSEAEFLDLVSVIMDNHLEKLFP 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0563 579 Pfam Ubiquitin family 33 99 IPR000626 GO:0005515
Lal17g0563 579 Pfam Ubiquitin family 105 176 IPR000626 GO:0005515
Lal17g0563 579 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 262 561 IPR000403 -
Lal17g0563 579 Gene3D - 103 204 - -
Lal17g0563 579 SUPERFAMILY Ubiquitin-like 32 100 IPR029071 -
Lal17g0563 579 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 4 2 577 - -
Lal17g0563 579 Gene3D - 24 102 - -
Lal17g0563 579 Pfam Phosphatidylinositol 3- and 4-kinase 271 526 IPR000403 -
Lal17g0563 579 ProSiteProfiles Ubiquitin domain profile. 103 180 IPR000626 GO:0005515
Lal17g0563 579 SMART ubq_7 103 176 IPR000626 GO:0005515
Lal17g0563 579 SMART ubq_7 27 98 IPR000626 GO:0005515
Lal17g0563 579 SUPERFAMILY Protein kinase-like (PK-like) 413 578 IPR011009 -
Lal17g0563 579 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 577 IPR044571 -
Lal17g0563 579 SUPERFAMILY Ubiquitin-like 99 179 IPR029071 -
Lal17g0563 579 CDD Ubl_ubiquitin_like 105 174 - -
Lal17g0563 579 ProSiteProfiles Ubiquitin domain profile. 25 98 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0563 Lal-Chr17 4010701 4014851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0563 1 576 Acyl Lipid Metabolism Gene Families AT5G24240 62.995 0.0 722
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0563 - - gmx:100812724 957.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0637 6 4151671 4154787 Lal17g0563 17 4010701 4014851 ECH
Lal18g0289 18 2366084 2369088 Lal17g0563 17 4010701 4014851 ECH
Lal22g0577 22 3948468 3951339 Lal17g0563 17 4010701 4014851 ECH
Lal3g1551 3 21271066 21274425 Lal17g0563 17 4010701 4014851 ECH
Lal5g0044 5 509648 513948 Lal17g0563 17 4010701 4014851 ECH
Lal18g1036 18 13348093 13352155 Lal17g0563 17 4010701 4014851 ECH
Lal17g0563 17 4010701 4014851 Lal17g0563 17 4010701 4014851 ECH