LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal15g1455	ATGACAGTTGCTGATTTTGCTTTGAGTTCGGTTCACAAAGAGCCTGTTTTTCTGGAAGGTCAACAGGGACAACATTGTTCCAGTGATCCAATTATGATTTACCTCAATATGGACAATGCTGTGACCCCGATGCGCGTGTTGGAGTCCGATTCCATTGCTTCAGTGAAACTAAGGATTCAAAAGTGCAAAGGCTTTGTGGTGAAGAAACAGAAGCTGGTATATGGTGGTCGAGAACTAGCTCGAAATGACACACTCATTAAGGATTATGGTGTTACAGATGGTAATGTTCTTCATTTAGTTCTTAAGCTTTCTGATCTTCTGTTCATAGTTGTGAGAACTGCTAGTGGCAAGGAATTTGAATTTCATATTGATAGGCATAGAAATGTGGGGTATCTTAAGCAACGGATTAGGAAAAAAGGGGAAGGTTTCATTGATGTTGATGAGGATCAAGAGCTGTTTCGCAATGGCGAAAAGCTTGATGACCACAGAGTTTTTCATGATATATGCAAGAGCGATGGTGATGTGATTCATTTAGTGATTACGAAATCGGCTAAGGTAAGGACCACACCAATTCACCAAGATTTGAAGCTTTTGGTTGAGGCATCTATACAAGGTGAGAGGAGCATTGGTCAAAAAGTAGCTAAGGTACCACCTGATGTAGGTTTCTGGTTGGAACCAATAATTGTGAATCCTAAGATCATTTTTTTTCCTTTCCTGTTGGACATGATCAACTCCACATTCGACGGTTTGAAGAAAGGGAATCGCCCTATTAGGTCCTCGGAGGGCACCGGAGGGACTTACTTCATGCAAAATTCAACAGGTCAGGAGCATGTTTCAGTTTTCAAGCCCGTGGATGAGGAACCAATGGCTGTGAACAATCCGCGAGGCTTACCAAGTTCGACTAATGGTGAAGGTTTGAAAAGAGGAACAAAGGTTGGAGAAGGAGCTTTCAGGGAAGTTGCAGCTTACCTATTAGACCATCCAAAGAGTGGGCCACGTTTAGTGACGGGTGAAGCATTAGGCTTTGCAGGTGTTCCTCCTACTGTTATGGTGCAGTGTTTACATGAAGATTTTAACCATCCAAATGGGTATGCTTGCTCACCAAAACATGTCAAGATTGGTTCATTGCAGAAATTCATGAATAATGATGGTAACTGTGAGGACATTGGACCGGGGGCCTTTCCGGTCGAGGAGGTGCATAAGATTACTGTGTTTGATATAAGAATGGCTAATGCAGATCGGCATGCTGGGAATATATTGATCCGAAAAGAGGCTGGTGGCCAGATTAAGCTCATTCCGATTGATCACGGCTATTGTCTACCTGACAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCGCAAGCTCGTCAGCCTTATTCTCCCGAAACGGTTGATTATATCAATTCTCTGGATGTTGAAAAAGATATAGAACTTCTGAAATATTATGGCTGGGATGTTCCACTTCATTGCGCGCGCACACTTCGCATTTCCACAATGCTGCTGAAGAAAGGTGTTGAGAGAGGTCTAACTCCCTATGCGATTGGAAGCATTATGTGTCGGGAAAATTTGAACAAGAAATCTGTAATCGAAGAGACTATTTGTGAAGCTCAGGATTCCATGCTTCCTGGCACCGATGAACCAACATTTCTTAACACTATCTCCAAGATCATGGATTCCCGCCTCGACGACTTTGCGAAAAAGTAG	1710	0.4281	MTVADFALSSVHKEPVFLEGQQGQHCSSDPIMIYLNMDNAVTPMRVLESDSIASVKLRIQKCKGFVVKKQKLVYGGRELARNDTLIKDYGVTDGNVLHLVLKLSDLLFIVVRTASGKEFEFHIDRHRNVGYLKQRIRKKGEGFIDVDEDQELFRNGEKLDDHRVFHDICKSDGDVIHLVITKSAKVRTTPIHQDLKLLVEASIQGERSIGQKVAKVPPDVGFWLEPIIVNPKIIFFPFLLDMINSTFDGLKKGNRPIRSSEGTGGTYFMQNSTGQEHVSVFKPVDEEPMAVNNPRGLPSSTNGEGLKRGTKVGEGAFREVAAYLLDHPKSGPRLVTGEALGFAGVPPTVMVQCLHEDFNHPNGYACSPKHVKIGSLQKFMNNDGNCEDIGPGAFPVEEVHKITVFDIRMANADRHAGNILIRKEAGGQIKLIPIDHGYCLPDKFEDCTFDWLYWPQARQPYSPETVDYINSLDVEKDIELLKYYGWDVPLHCARTLRISTMLLKKGVERGLTPYAIGSIMCRENLNKKSVIEETICEAQDSMLPGTDEPTFLNTISKIMDSRLDDFAKK	569

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal15g1455	569	Pfam	Ubiquitin family	37	103	IPR000626	GO:0005515
	Lal15g1455	569	Pfam	Ubiquitin family	109	182	IPR000626	GO:0005515
	Lal15g1455	569	Gene3D	-	18	106	-	-
	Lal15g1455	569	ProSiteProfiles	Ubiquitin domain profile.	31	102	IPR000626	GO:0005515
	Lal15g1455	569	SUPERFAMILY	Ubiquitin-like	28	104	IPR029071	-
	Lal15g1455	569	Pfam	Phosphatidylinositol 3- and 4-kinase	262	515	IPR000403	-
	Lal15g1455	569	CDD	Ubl_ubiquitin_like	109	179	-	-
	Lal15g1455	569	Gene3D	-	107	183	-	-
	Lal15g1455	569	SUPERFAMILY	Protein kinase-like (PK-like)	409	567	IPR011009	-
	Lal15g1455	569	PANTHER	PHOSPHATIDYLINOSITOL 4-KINASE GAMMA	1	567	IPR044571	-
	Lal15g1455	569	ProSiteProfiles	Phosphatidylinositol 3- and 4-kinases catalytic domain profile.	253	550	IPR000403	-
	Lal15g1455	569	PANTHER	PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2	1	567	-	-
	Lal15g1455	569	MobiDBLite	consensus disorder prediction	289	308	-	-
	Lal15g1455	569	SMART	ubq_7	107	181	IPR000626	GO:0005515
	Lal15g1455	569	SMART	ubq_7	31	102	IPR000626	GO:0005515
	Lal15g1455	569	SUPERFAMILY	Ubiquitin-like	102	182	IPR029071	-
	Lal15g1455	569	ProSiteProfiles	Ubiquitin domain profile.	107	185	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal15g1455	Lal-Chr15	16768484	16771804	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal15g1455	1	567	Acyl Lipid Metabolism Gene Families	AT5G24240	57.217	0.0	676

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal15g1455	-		-	gmx:100809172	942.569

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal15g1455	15	16768484	16771804	Lal15g1455	15	16768484	16771804	ECH
	Lal15g1455	15	16768484	16771804	Lal6g0637	6	4151671	4154787	ECH
	Lal15g1455	15	16768484	16771804	Lal18g0289	18	2366084	2369088	ECH
	Lal15g1455	15	16768484	16771804	Lal22g0577	22	3948468	3951339	ECH
	Lal15g1455	15	16768484	16771804	Lal3g1551	3	21271066	21274425	ECH
	Lal15g1455	15	16768484	16771804	Lal5g0044	5	509648	513948	ECH
	Lal15g1455	15	16768484	16771804	Lal18g1036	18	13348093	13352155	ECH
	Lal16g1146	16	7819956	7827176	Lal15g1455	15	16768484	16771804	LSH
	Lal16g0071	16	430092	433000	Lal15g1455	15	16768484	16771804	PCT
	Lal23g1558	23	15637302	15642355	Lal15g1455	15	16768484	16771804	PCT