Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0071 ATGTCGATTGCTGATGTTGCATTAACACCGATTTACAAAGAATCGGTGCATTGGAAAAACCAACAAGTAGGAATAGGAGCTTACCCGGGTGAGTCTATCCTTATATATCTAACTGTGAACGGAGCTGTGACCCCAATGCGTGTTTTGGAGTCTGATTCCATTGCCTCAGTGAAAATGAGGATTCAAACATGCAAAGGGATTGTAGGGAATAAGAAGAAGCAGAAGCTAGTTTTTGGTGGCAGAGAGTTAGCAAGAAATGATTCACTCATTAAGGATTATGGTGTCACTGCTGGCAATGTTCTTCACTTGGTTCTCCGTCTCTCTGATCTTATTTTCATTGTTGTGAGGACTACCTGTGGGAAAGAGTTTGAGTTTCAGATTGATAGGCACAGAAATGTAGGGTATCTTAAACAACACATCAAAAAGAAAGGGAAAGGTTTTGTTGATGTTGATGATCAAGAAATTTTTCGGGATGGTGAAAAGCTTGAAGATCAGAAATTGTTTCATGACATATGCAAGAGTGATGATGATGTGATTCATTTGGTCATTAAGGAATCAGCAAAGGTTAAGGCTAGACCAATTCACAAAGATTTAGAGCTTTCTGTTGTGGCAGCTGGTGTAGATTTCTGTTTTGAACCAATTATTGTGAATCCCAAGATCAAATTTTTGCCTTTCTTCTGGGACATGATTAACTCCACATTTGATGGTTTGCAAAAAGGGAATAACCCTATTAGATCTTCTGAAGGCACAGGTGGGACTTACTTCATGCAAGATTCAACAGGAATGGAATTTGTTTCTGTTTTTAAGCCCATGGATGAGGAGCCGATGGCGGTGAACAACCCGCGTGGCCTACCGGTTTCATCTAATGGCGAAGGCTTGAAAAGAGGGACAAAAGTGGGAGAAGGAGCTTTTAGAGAAGTTGCAGCCTATGTCTTAGATCATCCAAAGGCTGGAAGGCGTTTGGTGTCTAGTGAAGCTATAGGCTTTGCCGGTGTTCCACCTACTGCTATGGTTAAGTGCTTACACAAAGCATTTAACCATCCAGAAGGGTATGATTGCTCATCCAAGCACTTCAAAATGGGATCATTGCAGGTGTTTATGAAAAATGATGGCAACTGTGAGGACCTTGGACCAGGGGCTTTTTCTGTGGAACAGGTGCATAAGATTACTGTACTTGATATAAGGATGGCTAATGCAGATAGGCATGCTGGGAATATACTTTTCAAAAGAGAAGCAAATGGCCAAACTTTGCTCATTCCTATTGATCATGGCTACTGTCTACCAGAAAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCCCAAGCATCTCAGCCATACTCTCCTGATACAGTTGATTATATAAAATCTCTGAATGCTGAAGAAGATCTAGAACTTCTGAAATATTATGGTTGGGATGTTCCACTTGAGTGTGCCAGAACATTACGCATCTCCACAATGTTATTGAAGAGAGGTGTTGAGAGAGGTCTCACTCCCTATGACATTGGAAGCATTATGTGTAGGGAAAATCTGAACAAGGAATCTGTAATTGAAGAGATTGTATGTGAAGCCAAGGAATCATTGCTACCAGGCTATGGGGAATCTGAATTTCTTGAATCTGTATCACAGATAATGAATTCCCACCTTGAGAAGCTATGGAAATAG 1668 0.4077 MSIADVALTPIYKESVHWKNQQVGIGAYPGESILIYLTVNGAVTPMRVLESDSIASVKMRIQTCKGIVGNKKKQKLVFGGRELARNDSLIKDYGVTAGNVLHLVLRLSDLIFIVVRTTCGKEFEFQIDRHRNVGYLKQHIKKKGKGFVDVDDQEIFRDGEKLEDQKLFHDICKSDDDVIHLVIKESAKVKARPIHKDLELSVVAAGVDFCFEPIIVNPKIKFLPFFWDMINSTFDGLQKGNNPIRSSEGTGGTYFMQDSTGMEFVSVFKPMDEEPMAVNNPRGLPVSSNGEGLKRGTKVGEGAFREVAAYVLDHPKAGRRLVSSEAIGFAGVPPTAMVKCLHKAFNHPEGYDCSSKHFKMGSLQVFMKNDGNCEDLGPGAFSVEQVHKITVLDIRMANADRHAGNILFKREANGQTLLIPIDHGYCLPEKFEDCTFDWLYWPQASQPYSPDTVDYIKSLNAEEDLELLKYYGWDVPLECARTLRISTMLLKRGVERGLTPYDIGSIMCRENLNKESVIEEIVCEAKESLLPGYGESEFLESVSQIMNSHLEKLWK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0071 555 SUPERFAMILY Protein kinase-like (PK-like) 396 554 IPR011009 -
Lal16g0071 555 SMART ubq_7 33 106 IPR000626 GO:0005515
Lal16g0071 555 SMART ubq_7 111 184 IPR000626 GO:0005515
Lal16g0071 555 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 554 IPR044571 -
Lal16g0071 555 Gene3D - 19 109 - -
Lal16g0071 555 ProSiteProfiles Ubiquitin domain profile. 111 188 IPR000626 GO:0005515
Lal16g0071 555 SUPERFAMILY Ubiquitin-like 107 185 IPR029071 -
Lal16g0071 555 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 240 537 IPR000403 -
Lal16g0071 555 Pfam Ubiquitin family 113 185 IPR000626 GO:0005515
Lal16g0071 555 Pfam Ubiquitin family 40 107 IPR000626 GO:0005515
Lal16g0071 555 Gene3D - 110 186 - -
Lal16g0071 555 CDD Ubl_ubiquitin_like 113 182 - -
Lal16g0071 555 ProSiteProfiles Ubiquitin domain profile. 35 106 IPR000626 GO:0005515
Lal16g0071 555 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 554 - -
Lal16g0071 555 SUPERFAMILY Ubiquitin-like 37 108 IPR029071 -
Lal16g0071 555 Pfam Phosphatidylinositol 3- and 4-kinase 249 502 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0071 Lal-Chr16 430092 433000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0071 1 552 Acyl Lipid Metabolism Gene Families AT5G24240 56.119 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0071 - - gmx:100787492 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0071 16 430092 433000 Lal16g0071 16 430092 433000 ECH
Lal16g0071 16 430092 433000 Lal6g0637 6 4151671 4154787 ECH
Lal16g0071 16 430092 433000 Lal18g0289 18 2366084 2369088 ECH
Lal16g0071 16 430092 433000 Lal22g0577 22 3948468 3951339 ECH
Lal16g0071 16 430092 433000 Lal3g1551 3 21271066 21274425 ECH
Lal16g0071 16 430092 433000 Lal5g0044 5 509648 513948 ECH
Lal16g0071 16 430092 433000 Lal18g1036 18 13348093 13352155 ECH
Lal16g0071 16 430092 433000 Lal23g1558 23 15637302 15642355 LSH
Lal16g0071 16 430092 433000 Lal16g1146 16 7819956 7827176 PCT
Lal16g0071 16 430092 433000 Lal15g1455 15 16768484 16771804 PCT