Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1146 ATGTCAGTTGCTGATTTCGCTTTGAGTTCGATTCACAAAGAGCCTGCATTTTGTGTAGGGCAATTAGGACATCATTGTTCTGGTGATCCAATCAAGATTTACCTAAATGTGGATAGTTCTGTGACCCCAATGCGCGTGATGGAGTTCGATTCCATCGCTTCGGTGAAACTGAGGATTCAGAAGTGCAAGGGCTTTGTGGTGAAAAATCAGAAGCTGGTTTACTGTGGCAGAGAACTCGCTCGAAATGACACACTCGTTAAGGATTACGGTGTCGCCGATGGTAATGTTATTCATTTAGTTCTTAAGCTTTCTGATCTTCTGTTTATAGTAGTGAGGACCACTAGTGGCAAGGAATTTGAGTTTCACATAGATAGGCATAGAAATGTGGGGTATCTTAAGCAACGGATTAGGAAAAAGGGTGAAGGTTTGGTTGATCTTGATGAGGATCAAGAGCTTTTTCGCAATGATGAAAAGCTTGATGACCAAAGAGTTTTTCATGATATATGCAAGAGTGGTAGTGATGTGATTCATTTGATAATTAAGAAATCAGCTAAGATAAGGACCACTCCAATTTACCAAGATTTGAAACTTTTGGTTGAGGCATCTTTACCAGGCGAGAAGAGCATTGATGAAAAAGTACTAAAGGTACCACCCGATGTAGATTTCTGGTTGGAACCAATAATTGTGAATCCTAAGGTAAATCTTTTTCCTTTCGTGCGGGACATGATTAACTCCACATTCGACGGTTTGAAGAAAGGGAATCACCCTATTAGGTCGTCAGAGGGCACAGGAGGGACTTACTTCATGCAAGATTCAACAGGCCAGGAGTATGTTTCGGTTTTCAAGCCCATGGATGAGGAACCAATGGCTGTGAACAACCCAAGAGGTTTACCATGTTCTTCTAACGGTGAAGGTTTGAAAAGAGGGACAAAGGTTGGAGAAGGAGCTTTGAGGGAAGTTGCAGCCTACCTATTAGATCATCCAACACGTGGTTCGCGTTCGAGGACAGGTGAAGCAATAGGCTTTGCCAGTGTTCCTCCTACTGTTATGGTGCAGTGCTTACATGAAGAATTTAACCATCCAAATGGGTATGCTTGCTCATCAAAACATGTCAAGATTGGTTCGTTACAGAAATTCATGAACAGTGATGGTAACTGTGAGGACATTGGACCCGGGGCGTTTCCGGTGGAGGAGGTCCATAAGATTACTGTGCTTGATATAAGAATGGCTAATGCAGATAGGCATGCTGGGAATATATTGATCAGAAAAGAGGCTGGTCGCCAGATTAAGCTCATTCCTATTGATCATGGCTATTGTCTACCAGAAAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCACAAGCACGCCAGCCTTACTCTCCTGATATAGTTGATTATATCAATTCTCTGGATGCTGAAAAAGATATAGAACTTCTGAAATATTATGGCTGGGATGTTCCACTCCGGTGTATGCGAACACTTCGCATTTCCACAATGCTGCTAAAGAAAGGTGTTGAGAGAGGTCTTAGTCCCTACGCAATTGGAAGCATTATGTGTCATGAAAATTTGAACAAGGAATCTGTAATTGAGGAGATTATTTGTGAAGCTCAGGGTTCCTTGCTTCCTGGCATGGAGGAAGCAACATTGATTGAAATAATCTCCAAGATCATGGATTCCCGTCTTAACAAGATTGCGAAAAAAATAGTTTTTTCGTAA 1722 0.4175 MSVADFALSSIHKEPAFCVGQLGHHCSGDPIKIYLNVDSSVTPMRVMEFDSIASVKLRIQKCKGFVVKNQKLVYCGRELARNDTLVKDYGVADGNVIHLVLKLSDLLFIVVRTTSGKEFEFHIDRHRNVGYLKQRIRKKGEGLVDLDEDQELFRNDEKLDDQRVFHDICKSGSDVIHLIIKKSAKIRTTPIYQDLKLLVEASLPGEKSIDEKVLKVPPDVDFWLEPIIVNPKVNLFPFVRDMINSTFDGLKKGNHPIRSSEGTGGTYFMQDSTGQEYVSVFKPMDEEPMAVNNPRGLPCSSNGEGLKRGTKVGEGALREVAAYLLDHPTRGSRSRTGEAIGFASVPPTVMVQCLHEEFNHPNGYACSSKHVKIGSLQKFMNSDGNCEDIGPGAFPVEEVHKITVLDIRMANADRHAGNILIRKEAGRQIKLIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPDIVDYINSLDAEKDIELLKYYGWDVPLRCMRTLRISTMLLKKGVERGLSPYAIGSIMCHENLNKESVIEEIICEAQGSLLPGMEEATLIEIISKIMDSRLNKIAKKIVFS 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1146 573 SMART ubq_7 107 181 IPR000626 GO:0005515
Lal16g1146 573 SMART ubq_7 31 102 IPR000626 GO:0005515
Lal16g1146 573 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 567 IPR044571 -
Lal16g1146 573 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 253 550 IPR000403 -
Lal16g1146 573 CDD Ubl_ubiquitin_like 109 179 - -
Lal16g1146 573 Gene3D - 108 194 - -
Lal16g1146 573 Pfam Phosphatidylinositol 3- and 4-kinase 262 514 IPR000403 -
Lal16g1146 573 ProSiteProfiles Ubiquitin domain profile. 107 185 IPR000626 GO:0005515
Lal16g1146 573 Pfam Ubiquitin family 37 103 IPR000626 GO:0005515
Lal16g1146 573 SUPERFAMILY Protein kinase-like (PK-like) 409 569 IPR011009 -
Lal16g1146 573 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 2 1 567 - -
Lal16g1146 573 Gene3D - 21 107 - -
Lal16g1146 573 SUPERFAMILY Ubiquitin-like 102 182 IPR029071 -
Lal16g1146 573 SUPERFAMILY Ubiquitin-like 36 105 IPR029071 -
Lal16g1146 573 ProSiteProfiles Ubiquitin domain profile. 31 102 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1146 Lal-Chr16 7819956 7827176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1146 1 567 Acyl Lipid Metabolism Gene Families AT5G24240 55.286 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1146 - - gmx:100809172 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1146 16 7819956 7827176 Lal16g1146 16 7819956 7827176 ECH
Lal16g1146 16 7819956 7827176 Lal6g0637 6 4151671 4154787 ECH
Lal16g1146 16 7819956 7827176 Lal18g0289 18 2366084 2369088 ECH
Lal16g1146 16 7819956 7827176 Lal22g0577 22 3948468 3951339 ECH
Lal16g1146 16 7819956 7827176 Lal3g1551 3 21271066 21274425 ECH
Lal16g1146 16 7819956 7827176 Lal5g0044 5 509648 513948 ECH
Lal16g1146 16 7819956 7827176 Lal18g1036 18 13348093 13352155 ECH
Lal16g1146 16 7819956 7827176 Lal15g1455 15 16768484 16771804 LSH
Lal16g0071 16 430092 433000 Lal16g1146 16 7819956 7827176 PCT
Lal23g1558 23 15637302 15642355 Lal16g1146 16 7819956 7827176 PCT