Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja5g3303 . . . . . . . . Mtr4g0745 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1189 . . . . . . . . . Aev07g0706 . Ahy16g0086 . Aip06g00074 . . . . . . . . . . . . . . . . . . . . . Dod08g2253 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g0841 . . . . . . . Mtr4g0744 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr4g0994 . . . . . . . . . . . . . . . . .
Vvi18g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr4g0743 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu06g00709 . . . . . . . . . . . . .
Vvi18g1191 . . . . Adu08g00133 . . . Aev08g0215 Aev07g0705 Ahy17g2305 Ahy16g0085 Aip07g02455 Aip06g00073 . . Amo17g2176 . Apr9g0563 Apr5g1641 Arst8g00158 . Bach12g00114 . . . Bva06g01932 Bva10g00893 Car04g03571 . . Cca07g00290 . . Dod08g2254 Dod08g2254 . . . . Gma04g00245 Gma06g00224 . . Gso4g0229 Gso4g0229 . . Lal4g0076 Lal17g0063 . Lal8g0547 . . Lan14g0945 Lan14g0945 . Lan14g0945 . . Lapu9g02280 . . . . . . . . . . . Lja1g3522 Lja5g3304 Mal1g6023 . . . . . . . Mtr1g0688 . . . Phco7g00306 . . . . . Pste2g00710 . Pte3g01406 . . . . . Pvu9g0156 . . . . . Spst9g00303 . . . Sto5g0160 . Tpr1g3853 . . . Tsu01g00237 . . . . . Vimu10g03465 . . . Vivi4g05883 . . .
Vvi18g1192 . . . . . . . . . . . . . . . . . . . Apr5g1642 . . Bach12g00113 . . . Bva06g01931 Bva10g00894 . . . . Dere04g0107 . . . Enph1g1060 . . . Gma04g00244 Gma06g00223 . . Gso4g0228 Gso4g0228 . . . . Lal21g0121 . . . . . . . . . Lapu9g02281 . . . . . . . . . . . Lja1g3521 . . . . . . . . . . . . . Phco7g00304 . . . . . . . . . . . . . Pvu9g0157 . Rops10g02451 . . . Spst9g00302 . . . Sto5g0159 Sto9g3685 . . . . . . Vian4g02376 . . . Vimu10g03468 . Viun9g03653 . . . . .
Vvi18g1193 . . . . Adu08g00139 . . Aed9g0235 Aev08g0213 . Ahy17g2296 . Aip07g02448 . . . . . . Apr5g1643 Arst8g00161 . Bach12g00112 . . . Bva06g01930 Bva10g00895 . . . Cca07g00289 Dere04g0106 . . . . . Glsi08g2018 . Gma04g00243 Gma06g00222 . . Gso4g0227 Gso4g0227 . . Lal4g0075 . . . . . Lan14g0946 . . . . . Lapu9g02282 . Lasa5g04509 . . . . . . . . . Lja1g3520 . . Mal2g0498 Mepo3g07871 . Mesa9g05473 . . . . Mtr3g4251 . . Phco7g00303 . . . . . . . Pte3g01407 Pte1g02703 . . . . Pvu9g0158 . Rops10g02452 . Seca4g00458 . Spst9g00301 . . . . Sto9g3686 . . Trre5g05658 . . Tsu07g00277 Vian4g02377 . Vifa2g04479 . Vimu10g03470 . Viun9g03654 . Vivi3g00578 . . Vra5g1639
Vvi18g1194 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Dere Dere04g0107 Chr04 1092742 1097426 -
Vvi Vvi18g1186 Chr18 11788779 11789084 +
Vvi Vvi18g1187 Chr18 11789356 11791909 +
Vvi Vvi18g1188 Chr18 11794593 11796161 -
Lja Lja5g3303 Chr5 64003139 64017407 -
Mtr Mtr4g0745 Chr4 9440809 9442718 -
Vvi Vvi18g1189 Chr18 11801940 11803508 -
Aev Aev07g0706 Chr07 4587029 4589273 +
Ahy Ahy16g0086 Chr16 830747 833393 +
Aip Aip06g00074 Chr06 737112 741142 +
Dod Dod08g2253 Chr08 50325740 50328367 -
Mal Mal7g0841 Chr7 22464546 22466353 -
Mtr Mtr4g0744 Chr4 9425889 9428756 -
Tpr Tpr4g0994 Chr4 9534250 9538439 +
Vvi Vvi18g1190 Chr18 11832431 11833989 -
Mtr Mtr4g0743 Chr4 9411672 9417905 -
Tsu Tsu06g00709 Chr06 6142857 6199304 +
Vvi Vvi18g1191 Chr18 11862660 11870996 +
Adu Adu08g00133 Chr08 1952661 1956237 -
Aev Aev08g0215 Chr08 1208982 1220683 -
Aev Aev07g0705 Chr07 4572632 4577156 -
Ahy Ahy17g2305 Chr17 111036978 111041100 +
Ahy Ahy16g0085 Chr16 807198 812774 -
Aip Aip07g02455 Chr07 103119446 103123019 +
Aip Aip06g00073 Chr06 713992 719755 -
Amo Amo17g2176 Chr17 111667499 111671015 +
Apr Apr9g0563 Chr9 7975055 7981790 +
Apr Apr5g1641 Chr5 20046284 20052147 +
Arst Arst8g00158 Chr8 1952649 1956661 -
Bach Bach12g00114 Chr12 803913 807201 -
Bva Bva06g01932 Chr06 13090944 13093243 -
Bva Bva10g00893 Chr10 6795044 6800478 +
Car Car04g03571 Chr04 64841173 64855806 +
Cca Cca07g00290 Chr07 3803185 3809235 +
Dod Dod08g2254 Chr08 50339064 50345805 +
Dod Dod08g2254 Chr08 50339064 50345805 +
Gma Gma04g00245 Chr04 2114413 2120091 -
Gma Gma06g00224 Chr06 2003442 2009436 -
Gso Gso4g0229 Chr4 2077216 2083020 -
Gso Gso4g0229 Chr4 2077216 2083020 -
Lal Lal4g0076 Chr4 442868 452308 -
Lal Lal17g0063 Chr17 367222 372757 -
Lal Lal8g0547 Chr8 3778049 3783954 -
Lan Lan14g0945 Chr14 15852483 15857565 +
Lan Lan14g0945 Chr14 15852483 15857565 +
Lan Lan14g0945 Chr14 15852483 15857565 +
Lapu Lapu9g02280 Chr9 37381732 37387943 +
Lja Lja1g3522 Chr1 43896203 43899820 -
Lja Lja5g3304 Chr5 64067303 64073454 +
Mal Mal1g6023 Chr1 138302330 138307190 +
Mtr Mtr1g0688 Chr1 7727252 7732490 +
Phco Phco7g00306 Chr7 2147757 2153151 -
Pste Pste2g00710 Chr2 7431164 7436889 -
Pte Pte3g01406 Chr3 12274705 12279812 +
Pvu Pvu9g0156 Chr9 2412221 2418613 +
Spst Spst9g00303 Chr9 2852851 2858551 -
Sto Sto5g0160 Chr5 917626 922022 -
Tpr Tpr1g3853 Chr1 42569284 42574650 +
Tsu Tsu01g00237 Chr01 1888130 1893680 -
Vimu Vimu10g03465 Chr10 44431409 44436145 +
Vivi Vivi4g05883 Chr4 195603251 195607265 +
Vvi Vvi18g1192 Chr18 11890579 11891999 +
Apr Apr5g1642 Chr5 20054354 20059960 +
Bach Bach12g00113 Chr12 797508 801643 -
Bva Bva06g01931 Chr06 13085532 13090196 -
Bva Bva10g00894 Chr10 6801394 6806185 +
Dere Dere04g0107 Chr04 1092742 1097426 -
Enph Enph1g1060 Chr1 36827356 36832817 -
Gma Gma04g00244 Chr04 2109857 2113030 -
Gma Gma06g00223 Chr06 1997572 2002307 -
Gso Gso4g0228 Chr4 2072730 2075892 -
Gso Gso4g0228 Chr4 2072730 2075892 -
Lal Lal21g0121 Chr21 831299 836110 -
Lapu Lapu9g02281 Chr9 37394564 37400315 +
Lja Lja1g3521 Chr1 43889316 43894820 -
Phco Phco7g00304 Chr7 2138884 2143888 -
Pvu Pvu9g0157 Chr9 2421118 2426991 +
Rops Rops10g02451 Chr10 42848430 42853742 +
Spst Spst9g00302 Chr9 2844791 2849859 -
Sto Sto5g0159 Chr5 910209 916103 -
Sto Sto9g3685 Chr9 35230003 35234436 +
Vian Vian4g02376 Chr4 40465450 40470381 +
Vimu Vimu10g03468 Chr10 44442357 44444874 +
Viun Viun9g03653 Chr9 41905556 41910980 +
Vvi Vvi18g1193 Chr18 11893764 11894150 +
Adu Adu08g00139 Chr08 2127651 2128911 +
Aed Aed9g0235 Chr9 1683800 1686228 -
Aev Aev08g0213 Chr08 1199150 1203420 -
Ahy Ahy17g2296 Chr17 110869584 110871280 -
Aip Aip07g02448 Chr07 102958865 102960128 -
Apr Apr5g1643 Chr5 20062091 20063730 +
Arst Arst8g00161 Chr8 2139676 2141373 +
Bach Bach12g00112 Chr12 796088 796432 -
Bva Bva06g01930 Chr06 13082103 13085094 -
Bva Bva10g00895 Chr10 6807635 6809993 +
Cca Cca07g00289 Chr07 3788587 3789132 -
Dere Dere04g0106 Chr04 1083496 1085975 -
Glsi Glsi08g2018 Chr08 14204445 14204798 +
Gma Gma04g00243 Chr04 2105295 2106895 -
Gma Gma06g00222 Chr06 1993558 1995114 -
Gso Gso4g0227 Chr4 2068110 2069752 -
Gso Gso4g0227 Chr4 2068110 2069752 -
Lal Lal4g0075 Chr4 439516 442033 -
Lan Lan14g0946 Chr14 15860740 15862353 +
Lapu Lapu9g02282 Chr9 37402031 37404072 +
Lasa Lasa5g04509 Chr5 668409592 668411500 +
Lja Lja1g3520 Chr1 43886117 43888104 -
Mal Mal2g0498 Chr2 5816341 5818456 -
Mepo Mepo3g07871 Chr3 91741719 91745568 -
Mesa Mesa9g05473 Chr9 89977149 89979170 +
Mtr Mtr3g4251 Chr3 56366792 56370803 +
Phco Phco7g00303 Chr7 2134994 2136388 -
Pte Pte3g01407 Chr3 12282321 12284905 +
Pte Pte1g02703 Chr1 47091500 47093891 -
Pvu Pvu9g0158 Chr9 2429520 2431366 +
Rops Rops10g02452 Chr10 42855193 42856488 +
Seca Seca4g00458 Chr4 7402184 7402606 -
Spst Spst9g00301 Chr9 2841152 2842555 -
Sto Sto9g3686 Chr9 35235538 35242307 +
Trre Trre5g05658 Chr5 56661570 56664911 +
Tsu Tsu07g00277 Chr07 2125629 2129790 -
Vian Vian4g02377 Chr4 40472063 40473504 +
Vifa Vifa2g04479 Chr2 1316117098 1316117665 +
Vimu Vimu10g03470 Chr10 44446776 44447186 +
Viun Viun9g03654 Chr9 41911935 41913836 +
Vivi Vivi3g00578 Chr3 9531900 9532879 +
Vra Vra5g1639 Chr5 22816605 22818371 +
Vvi Vvi18g1194 Chr18 11898718 11909253 -
Vvi Vvi18g1195 Chr18 11909778 11914359 +