Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3686 ATGTTGAAGTTTCTTTCACGAGTGAGGATCGAATTCAATGCCTTGGACCCGCGGACAGCATCGTGTATGGAGTTTTTGGCACAGTGCAACGCACGAAAGGCCAAGGAATCTAACCCTGCTTGTCAGGTCGTGGTGAAGCGCCGAACTGATGACCATCCGCCACAGATCACTGTTACTTTCGTCAATGGGGTTGAAGAAGCCTTCGATGCAACATCCACCCCAGCCCAGACCATAAGGAACATGATTCTCGAAAAAGGTCAGCTCCTCGAGACCGAACAAATGTTCCGAGAGGCTGGCGAGGCCTGGCCTGTTGTCATCCCCGAGGAGGAGCTTCTCCAACCTTCACCCGGCATCAAAGTGCCCAAGGAAAGCAGAAGAGAAGAAGCAATAGCTAAATCCTATGAGCCTATTAACAGCCGGGAATCATTTTGGATTGTCACATTAACGCGCATTTCTTTCTGGTATTCTGATATGGCTATTGGTAATCCAGACGACGAAGGACTGAAGAAGCTTGAATACTTGTCCCTTGTTTCTAAGGTATGCACGGAGCTCGAATCCCACACCGGCACTGGTGATAAAGTACTGGCTGAGTTTATTACGGATTTGGGTCACGATTCAGAGACCGTGGAGGAATTTGACGCCAAATTGAAGGAGAATGGAGCAGAGATGCCGGATTATTTTGTCAGAACACTTCTGACCATCATACATGCCATTCTTCCTCCCAAGTCTAAGTTGGAAAAGGAATCGAAGCAAGATAGCACAACCGACGGAAGGAAGACCAAGTACAAGGCTCTTGCTATTGCTGACGATAGGGATCGAGCAAAGGATCTCGAGAAAGAATTAGAGGCGGAGGCTAGACAATACCATGGAGACAGAGAACGGGAAGAGGAAGATAGATACAGAGATAGGAGAGACAGGCGCAGGGATAGGTATGAAAGAGAGGGGAGGCATAGAGATAGAGACTACGAAGATGACGATGAGAGAAGGGATTACATGGGTAAGGGAAGTCACAGGGATAGAAATGATCGGCACAGGAGAGATGAGCGTGAAGCGAATGGAAATGGAAGGGAGTACAATGACGAAGAAAGAGATAGGAAAGTTCATAGAGATCAAAGGCACGTTTCTAATGAACCCGAGTTATATCAGGTTTATAAAGGCAGGGTATCAAGGGTTATGGATACAGGATGCTTCGTCCAATTAGATGATTTTAGAGGAAAGGAGGGTTTGGTACATGTTTCCCAGATTGCAACTCGAAGGATTGGTAATGCTAAAGACGTGGTGAAGCGGGACCAGGAGGTTTACGTGAAGGTAATATCAATTTCTGGTCAAAAGTTGAGTCTTTCAATGAGGGATGTTGATCAGCATACTGGGGATGATCTTCTCCCTTTAAAGAAGAGCTCTGGGGATGATGCTTATCGAATGAATCCTCAAGATTCAAAAGATGGACCAGTTGCCAGGACAGGTCTTTCTGGGATAAGAATTGTAGAAGAGAACGATGTTGGGTCTTCACGTAGACCTTTAAAGAGAATGAGCTCACCTGAGAAATGGGAAGCAAAACAGCTAATTGCTTCAGGTGTTTTAGGTGTTACAGAGTATCCAACATACGAGGAGGAGGGAGATGGAGTACTATACCAAGAAGAAGGTGCTGAAGAAGAACTTGAGATTGAGCTGAATGAGGATGAACCTGCCTTTTTGAATGGGCAGAGTAGATATTCAATGGACATGTCTCCTGTTAAGATTTTCAAGAATCCAGAAGGTTCACTGAGTCGTGCTGCTGCACTCCAGTCTGCGCTTATTAAGGAGCGCAGAGAAGTGCGAGAACAACAACAACGCACAATGCTTGACTCTATCCCAAAGGATCTAAATCGGCCTTGGGAAGATCCTATGCCTGATTCAGGTGAACGGCATCTTGCACAGGAGCTTAGGGGTGTAGGCTTATCAGCCTATGACATGCCTGAATGGAAGAAGGATGCTTATGGGAAAACAATCACTTTTGGACAAAGATCAAAGCTCTCCATTCAGGAACAGAGGCAGAGCTTACCAATCTACAAATTGAAGAAAGAATTGATTCAAGCTGTCTATGACAATCAGGTTCTGGTGGTCATTGGTGAGACAGGTTCAGGTAAAACAACTCAAGTCACACAGTATCTTGCTGAAGCTGGTTATACTACCAGGGGTAAAATTGGATGTACTCAACCTCGTAGGGTGGCTGCTATGTCAGTGGCAAAAAGAGTTGCGGAAGAGTTTGGTTGTCGATTGGGCGAGGAAGTTGGTTATGCCATTAGGTTTGAGGATTGCACTGGGCCAGATACTGTAATCAAGTACATGACAGATGGTATGCTTCTTAGGGAAATTTTGGTTGATGAGAATTTGTCACAATACTCTGTTATAATGCTTGATGAAGCCCATGAAAGAACAATGAGTACTGATGTTCTTTTTGGACTACTCAAGCAGCTGGTGAAACGTAGACCTGACATGAGATTGATTGTCACATCTGCCACACTAGATGCTGAAAAATTTTCAGGGTATTTCTTTAACTGCAACATCTTTACAATTCCTGGGAGAACTTTTCCTGTGGAGATACTCTATACCAAGCAGCCAGAAAGTGATTATCTAGATGCAGCCTTAATTACTGTCTTACAGATCCACTTGACAGAACCAGAAGGAGACATCCTTCTCTTTCTGACTGGTCAAGAGGAAATTGATTTTGCTTGCCAATCTCTTTATGAGAGAATGAAAGGCTTAGGTAAGAATGTTCCGGAATTGATTATTTTACCTGTCTATAGTGCCCTTCCTAGTGAAATGCAATCCAGGATATTTGATCCGGCTCCTCCAGGGAAGAGAAAAGTGGTTGTGGCAACTAATATTGCCGAGGCTTCTTTGACCATTGATGGTATTTTTTATGTGATTGACCCCGGATTTGCTAAGCAAAATGTATATAACCCAAAGCAAGGTCTTGATTCTTTGGTTATAACTCCGATTTCACAAGCATCTGCCAAGCAAAGAGCTGGTCGTGCAGGTCGTACAGGGCCTGGAAAGTGTTACCGCCTCTATACTGAGAGTGCATATAGAAATGAGATGTCTCCTACTTCAATTCCAGAAATTCAAAGGATAAATCTTGGGATAACTACTCTTACTATGAAAGCCATGGGGATAAATGATCTTCTGTCCTTCGGTTTCATGGATCCTCCTTCACCTCAAGCTCTCATTTCTGCCATGGAACAGCTGTACAGTCTTGGAGCATTGGATGAAGAGGGCCTTTTAACCAAATTGGGAAGGAAAATGGCAGAATTTCCTCTAGATCCACCATTATCCAAGATGCTTCTGGCCAGTGTGGACCTTGGTTGTAGTGATGAGATTTTGACCATAATTGCAATGATTCAAACAGGCAATATTTTTTACAGGCCTAGGGAAAAGCAAGCCCAAGCAGATCAGAAGAGGGCAAAGTTTTTCCAGCCAGAGGGCGACCATCTTACGCTACTTGCTGTATATGAGGCTTGGAAGGCTAAAAATTTTTCTGGACCCTGGTGTTTTGAGAATTTTGTTCAATCTCGATCTTTAAGAAGGGCACAGGATGTCAGGAAACAGCTTCTCACCATCATGGATAAGTACAAATTGGATGTTGCAAGTGCTGGAAAGAACTTCACTAAGATCAGGAAGGCTATCACCGCAGGATTCTTTTTTCATGTGGCTAGAAAGGACCCTCAGGAGGGTTACAGAACCCTAGTTGAGAACCAGCCTGTATATATCCATCCCAGTTCAGCTTTGTTCCAGAGACAGCCAGACTGGGTCATCTATCACGAGCTTGTGATGACAACAAAGGAATATATGCGTGAGGTCACTGTTGTAGATCCCAAATGGTTAGTTGAATTGGCTCCAAGATTCTTTAAAGTTGCTGATCCTACAAAGATGAGCAGGCGGAAGCGCCAAGAGCGTATAGAACCACTTTATGACAGATACCATGAGCCAAACTCATGGCGTTTGAGTAAACGCCGTGCTTAA 4002 0.443 MLKFLSRVRIEFNALDPRTASCMEFLAQCNARKAKESNPACQVVVKRRTDDHPPQITVTFVNGVEEAFDATSTPAQTIRNMILEKGQLLETEQMFREAGEAWPVVIPEEELLQPSPGIKVPKESRREEAIAKSYEPINSRESFWIVTLTRISFWYSDMAIGNPDDEGLKKLEYLSLVSKVCTELESHTGTGDKVLAEFITDLGHDSETVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKSKLEKESKQDSTTDGRKTKYKALAIADDRDRAKDLEKELEAEARQYHGDREREEEDRYRDRRDRRRDRYEREGRHRDRDYEDDDERRDYMGKGSHRDRNDRHRRDEREANGNGREYNDEERDRKVHRDQRHVSNEPELYQVYKGRVSRVMDTGCFVQLDDFRGKEGLVHVSQIATRRIGNAKDVVKRDQEVYVKVISISGQKLSLSMRDVDQHTGDDLLPLKKSSGDDAYRMNPQDSKDGPVARTGLSGIRIVEENDVGSSRRPLKRMSSPEKWEAKQLIASGVLGVTEYPTYEEEGDGVLYQEEGAEEELEIELNEDEPAFLNGQSRYSMDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPDSGERHLAQELRGVGLSAYDMPEWKKDAYGKTITFGQRSKLSIQEQRQSLPIYKLKKELIQAVYDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILVDENLSQYSVIMLDEAHERTMSTDVLFGLLKQLVKRRPDMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGITTLTMKAMGINDLLSFGFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDKYKLDVASAGKNFTKIRKAITAGFFFHVARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFFKVADPTKMSRRKRQERIEPLYDRYHEPNSWRLSKRRA 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3686 1333 SUPERFAMILY Nucleic acid-binding proteins 375 453 IPR012340 -
Sto9g3686 1333 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1218 1293 IPR011709 -
Sto9g3686 1333 Gene3D - 856 1030 IPR027417 -
Sto9g3686 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 1204 IPR027417 -
Sto9g3686 1333 CDD S1_DHX8_helicase 381 457 - -
Sto9g3686 1333 SMART helicmild6 906 1010 IPR001650 -
Sto9g3686 1333 Gene3D Glutaredoxin 1 99 - -
Sto9g3686 1333 CDD SF2_C_RHA 857 1018 - -
Sto9g3686 1333 Pfam S1 RNA binding domain 379 448 IPR003029 GO:0003676
Sto9g3686 1333 SMART ultradead3 678 862 IPR014001 -
Sto9g3686 1333 MobiDBLite consensus disorder prediction 288 376 - -
Sto9g3686 1333 Coils Coil 267 298 - -
Sto9g3686 1333 Pfam Helicase associated domain (HA2) 1072 1160 IPR007502 GO:0004386
Sto9g3686 1333 MobiDBLite consensus disorder prediction 458 488 - -
Sto9g3686 1333 Coils Coil 591 611 - -
Sto9g3686 1333 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 795 804 IPR002464 -
Sto9g3686 1333 Pfam 39S ribosomal protein L53/MRP-L53 12 63 IPR019716 -
Sto9g3686 1333 ProSiteProfiles S1 domain profile. 381 450 IPR003029 GO:0003676
Sto9g3686 1333 Gene3D - 1056 1154 - -
Sto9g3686 1333 Pfam DEAD/DEAH box helicase 686 836 IPR011545 GO:0003676|GO:0005524
Sto9g3686 1333 PANTHER ATP-DEPENDENT RNA HELICASE 244 1333 - -
Sto9g3686 1333 Gene3D - 652 855 IPR027417 -
Sto9g3686 1333 Pfam Helicase conserved C-terminal domain 878 1010 IPR001650 -
Sto9g3686 1333 SMART S1_6 379 450 IPR022967 -
Sto9g3686 1333 Gene3D - 375 461 IPR012340 -
Sto9g3686 1333 PANTHER - 244 1333 - -
Sto9g3686 1333 SMART ha2_5 1071 1161 IPR007502 GO:0004386
Sto9g3686 1333 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 690 853 IPR014001 -
Sto9g3686 1333 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 871 1051 IPR001650 -
Sto9g3686 1333 MobiDBLite consensus disorder prediction 288 378 - -
Sto9g3686 1333 CDD DEXHc_DHX8 675 853 IPR044762 GO:0000398|GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3686 Sto-Chr9 35235538 35242307 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3686 K12818 - gmx:100790809 2009.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3686 9 35235538 35242307 Sto9g3686 9 35235538 35242307 ECH