LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g1187	ATGCCGCCGGTGGCGAAACGCTTCCACTCTGACTACGTCGTGCCCTCAACTATCGACTCTGATCGCCGTTTCTCCAGTTCAATGAATTGCATGGGAAGAATGAAGTGGAATTCAACATCTGTGTTGATGGGGACATCACTAAATTTGACATTGTTAAATTGTGCTCCAATGTATTCTCGAAAGAGTTTAGAGTTCTGGACAGCTGCTTGCAATGATCTCGGGGAGATGCATAAAGCTTGGATAATGAAAAAGGTGATAAAGAGCTTAGGGAGCTCCATTGTTCCAAGGAAGAAAGACAGTTCTGCACCGTCATTTGACCTTAATCAGGCAGCTAGCACTGAAGATGATAGGGCTGATGGATCTCACAATTTAGGCGACTTCCCCATTGACCACGAAGCCGAGCATAGTCCCGAAAACAGGTGTATGTTTACAACTTCAGCATCGAGGGAGTTGTTCAATTCAGTAGACAATGTCATTACCTTCAAGCCTGTGGACTTTAACCTGATTCGACACCAAGTCAGAAGCTGCATTGCCAGGAAATTTTCCTCCGTCATAGGTGACAAGCTTTCAATCCAAATAGAAGATGAAGCTCTAGAGAAAATGTTTAGCTGCTTCACAACTGGGCAGTGTAGTTCTCATAGGTTTCTAGGGCGCGAGGGGCTGACTGAGAGTCACTTAATGGATATTCCTCATGGTTCTGAATATATGCTGACATATGAGGATCAGAATGAAGATACATCCAGATCAAGGCCCTTGGTGCTTAGATGGAGCAATGAAGAATTAAGATTTTCCACTGGCAATGATGGAGTTACTCGTCTTCAACACTGTTTAAAGCTTTGGAGTGCATACTATGGCGTTCCTAGAAGCTGCTCGAGCTCAATCAAAGAGTCAATATTTCTGGGGAAAGCAAAAAGGCCTGACGAAGTCATTGACATCTTCCATTTGATGCGTGTTGACTGTCGTATATGTACCCAGACACTGCCGCATACCTCCTCCACATATGAATGA	1008	0.4425	MPPVAKRFHSDYVVPSTIDSDRRFSSSMNCMGRMKWNSTSVLMGTSLNLTLLNCAPMYSRKSLEFWTAACNDLGEMHKAWIMKKVIKSLGSSIVPRKKDSSAPSFDLNQAASTEDDRADGSHNLGDFPIDHEAEHSPENRCMFTTSASRELFNSVDNVITFKPVDFNLIRHQVRSCIARKFSSVIGDKLSIQIEDEALEKMFSCFTTGQCSSHRFLGREGLTESHLMDIPHGSEYMLTYEDQNEDTSRSRPLVLRWSNEELRFSTGNDGVTRLQHCLKLWSAYYGVPRSCSSSIKESIFLGKAKRPDEVIDIFHLMRVDCRICTQTLPHTSSTYE*	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g1187	335	MobiDBLite	consensus disorder prediction	95	111	-	-
	Vvi18g1187	335	MobiDBLite	consensus disorder prediction	112	133	-	-
	Vvi18g1187	335	MobiDBLite	consensus disorder prediction	95	133	-	-
	Vvi18g1187	335	Pfam	AUX/IAA family	196	245	IPR033389	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g1187	Vvi-Chr18	11789356	11791909	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX/IAA	Vvi18g1187		AUX_IAA	4.7e-12	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g1187	-		-	vvi:100260369	174.481