Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g00578 ATGCTGAAGTTCCTATCAAGAGTGAAAATCGAATTCAACGCATTGGATCCACGCACCGCATCGTGTATGGAATTTCTCGCTCAATGCAATTCACGAAAAGCCAAAGAATCAAACCCCGCTTGCGAAGTCGAGGTGAAGCGTAAAAACGTGGAGCATCCGCCGCAGATCACGGTGACATTCGTTAACGGCGTGGAAGAAGCTTTCGATGCAACGTCGACGCCGGCGCACCATATAACGAAGATGATCCTGGAAAAAGGTCAGTTTCTAGAAACCGAACAGATGTTCCGTGAAGCAGGTGAACAATGGCCGGTTATAATTCCCGATGAAGAACTCTCTCAACACGCACCTGGCACAAAACCTAGGAAAGCCGAGGAGAAGAAGCAATAG 387 0.4832 MLKFLSRVKIEFNALDPRTASCMEFLAQCNSRKAKESNPACEVEVKRKNVEHPPQITVTFVNGVEEAFDATSTPAHHITKMILEKGQFLETEQMFREAGEQWPVIIPDEELSQHAPGTKPRKAEEKKQ 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g00578 128 Pfam 39S ribosomal protein L53/MRP-L53 12 63 IPR019716 -
Vivi3g00578 128 Gene3D Glutaredoxin 1 99 - -
Vivi3g00578 128 MobiDBLite consensus disorder prediction 114 128 - -
Vivi3g00578 128 PANTHER 39S RIBOSOMAL PROTEIN L53, MITOCHONDRIAL 1 128 - -
Vivi3g00578 128 MobiDBLite consensus disorder prediction 106 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g00578 Vivi-Chr3 9531900 9532879 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g00578 K17434 - jre:108981148 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g00578 3 9531900 9532879 Vivi3g00578 3 9531900 9532879 ECH