Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1186 ATGACAGAAGAAACTAATGTAAGGTCTGATGACTTCACTTTTACCAGTGCCCTTGCTGCCTGTGCAGGGCTTGCTTCAATGAGCCATGGTAAGCAGATACATGCTCATCTAATAAGAACGAGGCTGTATCAGGATCTGGTAGTTGACAACGCACTTGTGAACATGTATGCTAAATGTGGTTGTATTGGCTATGCATATGATATATTCAACAAAATGGTCCATCACAATCTTGTCTCATGGAACACCATAATTGCTGGATTTGGAAGTCATGGGCTTGGGGAGAGAGTTGTAGAACTTTTTGAATAG 306 0.415 MTEETNVRSDDFTFTSALAACAGLASMSHGKQIHAHLIRTRLYQDLVVDNALVNMYAKCGCIGYAYDIFNKMVHHNLVSWNTIIAGFGSHGLGERVVELFE* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1186 101 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 79 IPR002885 -
Vvi18g1186 101 Pfam PPR repeat 78 101 IPR002885 -
Vvi18g1186 101 Pfam PPR repeat 50 76 IPR002885 -
Vvi18g1186 101 Gene3D Tetratricopeptide repeat domain 1 101 IPR011990 GO:0005515
Vvi18g1186 101 NCBIfam pentatricopeptide repeat 50 77 IPR002885 -
Vvi18g1186 101 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 101 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1186 Vvi-Chr18 11788779 11789084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1186 1 86 Glycoside Hydrolase AT3G49170 31.395 2.91e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1186 - - vvi:100246893 197.208