Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g0026 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0027 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g01810 . Car04g02755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g4798 . . . . . . . Mtr1g1110 . . . . . . . Psa6g3023 . . . . . . . . . . . . . . . . . . . Sto5g0008 . Tpr1g2873 . . . Tsu01g01249 . . . . . . . . . . . . .
Vvi18g0028 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva10g01036 Car04g02756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g4799 . . . . . . . Mtr1g1109 . . . . . . . Psa6g3021 . . . . . . . . . . . . . . . . . . . . . Tpr1g2874 . . . Tsu01g01248 . . . . . . . . . . . . .
Vvi18g0029 . Acco05g3055 . Accr3g00002 . Adu06g01338 . . . Aev07g2397 . Ahy16g0003 . Aip06g00004 . Alju07g3014 . . Apr9g0700 . . Arst6g01767 . Bach3g02514 . Bisa05g0483 . Bva10g01035 . . . . . Dere05g2945 . Dod08g2337 . . . Glsi10g0011 . . . Gma17g02503 . . . . . . . . . . . . . . . . . Lapu8g01074 . Lasa5g04627 . . . . . . Lele27g2087 Lele28g0001 . Lja5g3366 Mal1g6163 . . Mepo4g01953 . Mesa1g00004 . Mibi08g2669 Mtr1g0771 . . . . Phco2g00007 . . . . . Pste8g01498 . . . Pte2g01313 . . . Pvu1g0006 . . . . . Spst8g02095 . . Sto5g0009 . . . . Trre1g00008 Tsu01g00151 . . . . . . . . . . Vivi4g06002 . .
Vvi18g0030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g02757 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g4801 . . . . . . . Mtr1g1108 . . . . . . . Psa6g3016 . . . . . . . . . . . . . . . . . . . Sto5g0010 . Tpr1g2875 . . . Tsu01g01246 . . . . . . . . . . . . .
Vvi18g0034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g02758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0035 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g0026 Chr18 338896 344306 -
Vvi Vvi18g0027 Chr18 348407 353213 -
Bva Bva06g01810 Chr06 12503994 12509719 -
Car Car04g02755 Chr04 53470090 53476420 -
Mal Mal1g4798 Chr1 115575504 115580869 -
Mtr Mtr1g1110 Chr1 12640146 12646302 +
Psa Psa6g3023 Chr6 255203136 255209166 +
Sto Sto5g0008 Chr5 86845 93970 -
Tpr Tpr1g2873 Chr1 33100055 33106605 -
Tsu Tsu01g01249 Chr01 11551218 11556042 +
Vvi Vvi18g0028 Chr18 368816 375109 -
Bva Bva10g01036 Chr10 7530275 7535763 +
Car Car04g02756 Chr04 53483045 53488584 -
Mal Mal1g4799 Chr1 115598766 115604192 -
Mtr Mtr1g1109 Chr1 12624382 12630238 +
Psa Psa6g3021 Chr6 255044188 255050402 +
Tpr Tpr1g2874 Chr1 33119460 33125520 -
Tsu Tsu01g01248 Chr01 11541376 11547629 +
Vvi Vvi18g0029 Chr18 381855 387228 -
Acco Acco05g3055 Chr05 44999745 45002650 -
Accr Accr3g00002 Chr3 47149 49939 +
Adu Adu06g01338 Chr06 18583352 18586414 +
Aev Aev07g2397 Chr07 24632840 24635609 +
Ahy Ahy16g0003 Chr16 38593 42112 -
Aip Aip06g00004 Chr06 33491 36599 -
Alju Alju07g3014 Chr07 55125653 55129949 -
Apr Apr9g0700 Chr9 11673498 11695404 +
Arst Arst6g01767 Chr6 18616181 18619591 +
Bach Bach3g02514 Chr3 31047934 31053767 +
Bisa Bisa05g0483 Chr05 7849261 7861563 -
Bva Bva10g01035 Chr10 7525355 7528602 +
Dere Dere05g2945 Chr05 39865522 39870903 +
Dod Dod08g2337 Chr08 51520305 51524631 +
Glsi Glsi10g0011 Chr10 175258 187529 -
Gma Gma17g02503 Chr17 43026272 43035740 +
Lapu Lapu8g01074 Chr8 28700919 28714524 +
Lasa Lasa5g04627 Chr5 681497323 681499625 -
Lele Lele27g2087 Chr27 24727370 24730889 -
Lele Lele28g0001 Chr28 4526 7958 +
Lja Lja5g3366 Chr5 65765992 65776111 +
Mal Mal1g6163 Chr1 140772276 140782956 +
Mepo Mepo4g01953 Chr4 24745860 24749060 +
Mesa Mesa1g00004 Chr1 56806 59651 -
Mibi Mibi08g2669 Chr08 44614990 44618388 -
Mtr Mtr1g0771 Chr1 8675876 8679383 +
Phco Phco2g00007 Chr2 105235 113862 -
Pste Pste8g01498 Chr8 8220403 8227489 +
Pte Pte2g01313 Chr2 16114281 16119850 +
Pvu Pvu1g0006 Chr1 134609 140566 -
Spst Spst8g02095 Chr8 29204415 29211356 +
Sto Sto5g0009 Chr5 103648 109694 -
Trre Trre1g00008 Chr1 120098 125163 -
Tsu Tsu01g00151 Chr01 1163383 1169785 -
Vivi Vivi4g06002 Chr4 197231806 197235450 +
Vvi Vvi18g0030 Chr18 390102 390359 -
Vvi Vvi18g0031 Chr18 393237 395443 +
Vvi Vvi18g0032 Chr18 397362 397766 -
Vvi Vvi18g0033 Chr18 399190 410690 +
Car Car04g02757 Chr04 53510824 53514313 +
Mal Mal1g4801 Chr1 115657421 115661312 +
Mtr Mtr1g1108 Chr1 12599666 12603766 -
Psa Psa6g3016 Chr6 253385542 253389089 +
Sto Sto5g0010 Chr5 111616 114321 +
Tpr Tpr1g2875 Chr1 33148098 33152146 +
Tsu Tsu01g01246 Chr01 11522607 11526232 -
Vvi Vvi18g0034 Chr18 412259 413077 +
Car Car04g02758 Chr04 53518452 53521706 +
Vvi Vvi18g0035 Chr18 413191 415923 +