Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3016 ATGGCGGAGTGTGAAGTCCAGAAGGTAGATCCAGAGACAGAGTTCCTATCATCAAAGAGAGAAACCGGGAACGAATGGGAAACCTTCAAAGAAAACGTGAGACCGTTGAAAAGAGGCCGAAATGTTAACATTCTCAACCAAGCTCTCAAGTCTCACACCGATAACTACCTCAAGAAATCCCTTCTTCACCAGCGAAGAAAACTAATTGAAGCAATTGATGATTACGAAGGCGAAGATCCTCTTTTCCCTTGGATACAGTGTATGAAGTGGGTTCAGGAAGCGTTTCCTCCGGGTGGAGATAGCTCAGGGTTGGTGGTGATTTATGAACAATGTCTGCGTGCTTTTTGGCATTCGGAACAGTATAAAGATGATTTGCGCTACCTCAAAGTGTGGCTTGAATATGCAGATAATTGTTATGATAAGGAAGTTATATATGCTTTTTTGGATGCAAATGGAATTGGAAAAACTCATTCCAATTTCTACATTTCATATGCTTTGCATTTGGAATCTAAGAACAAGTTTAAAGCGGCTAACCAGACATTTGAACTTGGCATATCTAGGAATGCTCAACCCATTGAAAAATTGAAAGCTGCTTACAGAAAATTTCTTGTACGCTCAATGTCAAGGACTAATGCTATAGATGAACCAATGGAAAAACAGGCTCCTGTGCGTAGCTTTGGAACTCTTCTCGCCAAAGGAGAAAATAGTACCCGGTTGGCCTCTTTGAACAGTGATCATTCTGCTAAAAATGATAGGACTCGAGCAGCTCCACTCTCCATTTATAAAGATTCAAATGCCAGTGGTGAGACTTGCCCACCACATCAGCCAGACCTGTCACACTCTTGGCGCAACCTTGGAGCTCGAGCTGAAAGAAACAAGGAAAACAATGCAATTCCTGCCAATTGGAAATCCTACAAGGTTCCACAGCGACCGGGGACTAGAACTGCAGTGGCTAGTGCAAGTGCCTCCTGCATCCCAGTGTTTGTTGATGAAGAATGTCAAGGTTCATCAAGTCTGAAAGCAGAGGGTAAGAACGGTAAGTCCAAAAGTTTGAAGATTAGGCAAGAAGACGAAAAGGACTTGAAAAGAGAAGCAGAGTTACTACGGAAGAATCCATTACGCAACTTTCCACATACCAGCCTCCCCAGATAA 1152 0.4288 MAECEVQKVDPETEFLSSKRETGNEWETFKENVRPLKRGRNVNILNQALKSHTDNYLKKSLLHQRRKLIEAIDDYEGEDPLFPWIQCMKWVQEAFPPGGDSSGLVVIYEQCLRAFWHSEQYKDDLRYLKVWLEYADNCYDKEVIYAFLDANGIGKTHSNFYISYALHLESKNKFKAANQTFELGISRNAQPIEKLKAAYRKFLVRSMSRTNAIDEPMEKQAPVRSFGTLLAKGENSTRLASLNSDHSAKNDRTRAAPLSIYKDSNASGETCPPHQPDLSHSWRNLGARAERNKENNAIPANWKSYKVPQRPGTRTAVASASASCIPVFVDEECQGSSSLKAEGKNGKSKSLKIRQEDEKDLKREAELLRKNPLRNFPHTSLPR* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3016 383 Coils Coil 351 371 - -
Psa6g3016 383 Coils Coil 58 78 - -
Psa6g3016 383 Pfam Mad3/BUB1 homology region 1 64 185 IPR013212 -
Psa6g3016 383 MobiDBLite consensus disorder prediction 345 359 - -
Psa6g3016 383 MobiDBLite consensus disorder prediction 335 359 - -
Psa6g3016 383 ProSiteProfiles BUB1 N-terminal domain profile. 68 230 IPR013212 -
Psa6g3016 383 SMART mad3_bub1_i 61 185 IPR013212 -
Psa6g3016 383 Gene3D - 19 205 - -
Psa6g3016 383 PANTHER MITOTIC SPINDLE CHECKPOINT PROTEIN BUBR1 23 383 - -
Psa6g3016 383 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 23 383 IPR015661 GO:0007094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3016 Psa-Chr6 253385542 253389089 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3016 K02178 - gmx:100799090 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3016 6 253385542 253389089 Psa6g3016 6 253385542 253389089 ECH