Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0032 ATGGCATCTTTCGTGGCTTTATGCGCGCCATCGCATGGATCACAGGGCTCCATCCTGTCTTCGTCCTTCTCGATAAGATCCGGTGCCTTGTGCGACGTATCTCGCCCCCTGCGAAGTCCAAAGAAGGTGAATTTATGCGTGAAAGCGATGGGGGTGGTGAAGTTCAAAGGGACGCAGATGAGAGAGAAGCAGCTGACGGAGTTGATCGAGAAGAAGGTACTGGAAGCGAAGCAGGTGTGTGAGGGAGACGAGACCTCCGACGAGTGTAAGGTGGCTTGGGACGAAGTGGAAGAGGTCAGCCAGGCCAAGGCGGATCTCCGGCGGAAGATGGAGAAAGAAGATCCCTTGGAGTCGTATTGCCAGGAGAATCCGGAGAATGAGGAGTGTCGAATCTACGAAGATTAA 405 0.5383 MASFVALCAPSHGSQGSILSSSFSIRSGALCDVSRPLRSPKKVNLCVKAMGVVKFKGTQMREKQLTELIEKKVLEAKQVCEGDETSDECKVAWDEVEEVSQAKADLRRKMEKEDPLESYCQENPENEECRIYED* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0032 134 PANTHER CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTIC 29 134 IPR039314 -
Vvi18g0032 134 Pfam CP12 domain 65 133 - -
Vvi18g0032 134 SMART CP12_2 65 134 IPR003823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0032 Vvi-Chr18 397362 397766 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0032 - - vvi:100251226 255.373