LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01248	atgtttaataGTATAAATAAGAGTTATATAAACCAAGTTACTAGTATAGACTATAGACTAACATTACCTTTCACTCCTTCTTTATTtgcttcttctcttctctgtcGGCTATTTATCTGCATCTACATCTCTTTCTGTGTTCCCACCCAACTTCCTTATTTCTCGTTCTTTTCCATTCCCTTCTCTCAAATCTCTGATCTACACTTTCAACCGCTTCATCTCACTACTCTTCATCTCCGAAGTGCAATGACGGCGGAGGAGGTGTTGAACGTCGTACACAGCAAAGAGATTTCTGATAACGGCGGTGGTGTAGAAGATCATCATAAGATCGTAACGGAGCATTGTAATGGTAAGGAAATTTCCGTTAACGGCAATGTCGGTGGTGAGGTTGTTTCTGATATCGTTGATTCAGATCCGATCGTTACCGTTGACGTTAACAGTAACGGCAACAGTAACGGCAACAGTAACGGTGTTGTAGATTTAGAGGATCACAAGGTGGAAGGTGAATCTGAAGTTAAGGTTATTTCTAATTCTAATGGTTCTGTTGATGAAACGACGAAGGTTGATGTCGTTGAACGGGAAGGAGAGATTTATCAAAACGGTTCGGGATCTGATGATAATCACGTTCTCGTTACTGATGATACTGTTGCGGAGGTTCATAACGGTGCGTTGGATAATGAATTGAGTGCATGCGCTGTGGAGAGTTCTGAGAACGAGATTCGTGGTGAAGTTAGTGATTCTGTTGTGGAGGAAGGAGTGAAGGATCGGGATCAGGATCGTGAATTGGAGAGTGTTGAAAACGGTGTCGTTGAGGAGAATGAGATTTGTGATGGTGTTGCTGACGTGGACAATAGTGATCCCGAATTAGAAGGTGTAGTTGTTGAAAACGGTGTGGTGGATAGGGATGGAGAAGGAGATGTAGAAGAGATCAAGGTTCCGGTGCATGTTCCTGTTGTTGTTGAGGAAGTTGGTGCTGCTTCTACTGAAGCGGTGGAGGGTGGTGATTTTGATGTGGTGGGAACAACAGAATCTAAAGATCATGAGAGTGTAGAGAGCGAAAATGTTGGCGGTGTAGGTGTAGATGTTTCGGGTgagaagaatgaaatttttgATGTTGAATTGGAAAGTGAAGTTGGTGCTGAAGTGAGTGATTCAGCTGAGAAGAAATTGGAAAGTGCAGTTGATGCTGAAGTGAGTGAATCAGCTGAGAAGAACGAAATTCGTGATGTTGAATTGGATAGTGAAGTTGTTGCTGAAGTGAGTGATTCAGCTGAGAAGAAATTGGAAAGTGTAGTTGATACTGAAGTGAGTGAATCAGCTGAGAAGAACGAAATTCGTGATGTTGAATTGGAAACTTCAGTTGATGCTGAAGTGAGTGAATCAGCTGAGACGAATGGAATTCATGATGTTGAATTGGAAACTGTGATTGATGCTGAAGTGAGTGAATCAGCTGAGAAGAATGAAACTCATGATGTTAAATTGGAAAGTGTAGTAGATGCTGAAGTGAGTGATTCAGCTGAGAAGAATGAAATTCCTGTTGACGTTAACGGAGTATCTGATGATACAGATGTGAAGCAATGGGCAGTTGAAGATACTCAAAACGGTTTAGAGAAGACACCGGTTGAGTCTGTCTCTGATACAATTGTTGAAAATGGTGTGGCAGAGGTTGAGGTGAGTGAATGCACTGAGGGGGAGAATGTGATTCCTGTTGATGTTAGTGAATCAGAGAGGTCTGTTGAGGTACCTGAACCTCAAGTTCTTCAAGAAAAAGATTTAGCAGAAAAAATAGAGTCAGGGGTTTTTGATGATGCTGGCGAAGGTAAAGGTGAAAATGAACCTTCTGTTGATACGAAAAACATTGAAGAGGAGGGCGAGGCTGCGCCTTCTGATAATGTTGTCAAGGGTGAAGGTGAATCTATTGAAGTGTCTGAGATTAAAAACGATGCAGTGGAGAGTGAAGCTGAACCTTCAAAGGAAACCGTGGTGAGTGAAGCTGTGGTGGGTGAAGCTGAACCTTCAAAGGAAACCGGGTTGAGTGCAGCTGAACCTTCAAAGGAAACCGTGGTGAGTGAAGCTGAACCTTCAAAGGAAACCGTGGTGAGTGAAGCTGAAGCTTCAAACAATGCAGTTCAGAGTGAGGCCGATCCTTCTGTTGATGTTCCAGATTTGAAAACCAATGTTGTGGATAGAGAAGCCGAACCTCCCGTTGAAGCCAAACCTTCAGTTGAAGCCGAAACATCAGTTGAAGCTGAAATTTCAGCTGAAGGGGAAGGCAGCAACCCGACAGATGAAGATTTGAAAACACCCCAAGAAGCATCAACAGCCGATGCTACAGATGCACAGAATCTGGTCACCGAGGTGGTGAGGAAGCCGTTCTATTGGTTGATCCGGGTTCCAcgatatgatgatgatgaaaatataaaagagcAAATTCAGCATGCCGCTCAACAAGTAGAGGAGAAGACTAAAATCCGTGACGAAATTCGTTCTGAAAGCCAGGCTAAAAGGGCCCTTTGTAAAGAGTATGGCCAAGAATTTAGAGCTGCATTACAAGAAGAGAGAGCTGCTAGGGACTTACTCAAAGCCAAACGGCAAGAGATGGATTCAGTTCAATCCACCATGAGTAGATTAAACAATGCAATTTCTGTAGGTGATATAGATGGCAAGatTAGAAACATGGAACACATGATCCAGCATGAAACTCTGCCTCTAAAAGAAGAAAAGCAATTGATACgccaaatcaaacaattgaaGCAGAGTCGTGGCGAACTGTCTAATATTATAGCAAAACAGGATCAATCACAATCTCTTGACGACCAAGAAAGTATTGAAGAGCAAACTAAGCGATTACAGCTTTTGAGGAGGGAATTGGATGTGCTTAGAAATAATGTTCTGAAGGCAGAAACAATAACTAAAGCAGCAAAGAAGAAATCTGATGAAGAAAGTAATCAACTGAGCAAGCTTATGGCTCAGTATAAGGCTGCTGATGACACTCGTCAAGAGGCATTTGTCAAGTTACAGATTTTGAGAAGGCAATTGCACGAGAAGAGCAAATATTTTTGGGAATACAAAAACGCTTCAATGAGAGCGCAAGAACTAGGAGCACAGAGGAAGAAAGAGGAGTTGCAAAAATTATGTATTGATCAGGCTGAGCGAATACATGAGATGATGAAGAATGATGAGTTCAGAAGGAGCTATATCCGGTGCAACACCAGGAGTACACTGAGGAGACTGCAAACTTATGATGGCCGAGGGCTTGGTCCTGATGAAGAGGCACCCCCGATTCCTCCTAATCCCTTCATTGAAAGAGCTTCCAAAAATGATGCTTTGGTCTCACAATCAACTCCTGAACAACAAAAGAAACCAATACCAACAGAATCTGTTGCTGTTAATACAAAGGATGAACCCGCTTCCAACGTTGCGGTACAAAAACCTGAAATAAGTCAGACAATTAAAGCTAAAAAGCCTGCAAAACCTGCTCCAGAGAAGAAGTTAGCGGTTCCAGTTTCTCGTTGGGGGGATGAGTCCGATGAAGATAAGGAACCTAAGGAACCTgtgagaacaaaggaggaagagGAGTGGATCTTAAAGGCTGAAAAGGCGAagaaggaggaagaagaagcaaAACTAAAGGAATTAAAAAGGCTAGAGGAAATTGAGAAAGCTAAGGAGGCACTTCAGAGAAAAAAGCGTAATGCAGAGAAGGCCCAACAAAGGGCTTTATATAAGGCCCAAAAAGAAGCTGAGCAAAAAGAGAAGGAAAGGGAGAAAAGAGCAAggaagaaggaaaaaagaaagacaGTTTCTCCCGAAGATGCTGTGGAGAATACAGAACAAGAATCTGCAGCTTATCCTGAAATTCTGACAAGAACATTGGAAGAATCTGATCAAATTGAGAAACCAGCTGAGATAACAAAAAGGCCAGTGAAACCATCTCAATTCACAAAGCAAAACAAGGTAAAATCTTTGCCCATGGCTATTCGCAACCGAGGGAAGAGACGAATCCAACCATGGATGTGGTGGGCTCTAATTGCAGTTCTGGTTATTGCTGCCTTGTTTTATATTGGGAATAACAGCTCCTTGATATCATCTTTTCAAAGCTTTGGTTTCTGA	4113	0.4089	MFNSINKSYINQVTSIDYRLTLPFTPSLFASSLLCRLFICIYISFCVPTQLPYFSFFSIPFSQISDLHFQPLHLTTLHLRSAMTAEEVLNVVHSKEISDNGGGVEDHHKIVTEHCNGKEISVNGNVGGEVVSDIVDSDPIVTVDVNSNGNSNGNSNGVVDLEDHKVEGESEVKVISNSNGSVDETTKVDVVEREGEIYQNGSGSDDNHVLVTDDTVAEVHNGALDNELSACAVESSENEIRGEVSDSVVEEGVKDRDQDRELESVENGVVEENEICDGVADVDNSDPELEGVVVENGVVDRDGEGDVEEIKVPVHVPVVVEEVGAASTEAVEGGDFDVVGTTESKDHESVESENVGGVGVDVSGEKNEIFDVELESEVGAEVSDSAEKKLESAVDAEVSESAEKNEIRDVELDSEVVAEVSDSAEKKLESVVDTEVSESAEKNEIRDVELETSVDAEVSESAETNGIHDVELETVIDAEVSESAEKNETHDVKLESVVDAEVSDSAEKNEIPVDVNGVSDDTDVKQWAVEDTQNGLEKTPVESVSDTIVENGVAEVEVSECTEGENVIPVDVSESERSVEVPEPQVLQEKDLAEKIESGVFDDAGEGKGENEPSVDTKNIEEEGEAAPSDNVVKGEGESIEVSEIKNDAVESEAEPSKETVVSEAVVGEAEPSKETGLSAAEPSKETVVSEAEPSKETVVSEAEASNNAVQSEADPSVDVPDLKTNVVDREAEPPVEAKPSVEAETSVEAEISAEGEGSNPTDEDLKTPQEASTADATDAQNLVTEVVRKPFYWLIRVPRYDDDENIKEQIQHAAQQVEEKTKIRDEIRSESQAKRALCKEYGQEFRAALQEERAARDLLKAKRQEMDSVQSTMSRLNNAISVGDIDGKIRNMEHMIQHETLPLKEEKQLIRQIKQLKQSRGELSNIIAKQDQSQSLDDQESIEEQTKRLQLLRRELDVLRNNVLKAETITKAAKKKSDEESNQLSKLMAQYKAADDTRQEAFVKLQILRRQLHEKSKYFWEYKNASMRAQELGAQRKKEELQKLCIDQAERIHEMMKNDEFRRSYIRCNTRSTLRRLQTYDGRGLGPDEEAPPIPPNPFIERASKNDALVSQSTPEQQKKPIPTESVAVNTKDEPASNVAVQKPEISQTIKAKKPAKPAPEKKLAVPVSRWGDESDEDKEPKEPVRTKEEEEWILKAEKAKKEEEEAKLKELKRLEEIEKAKEALQRKKRNAEKAQQRALYKAQKEAEQKEKEREKRARKKEKRKTVSPEDAVENTEQESAAYPEILTRTLEESDQIEKPAEITKRPVKPSQFTKQNKVKSLPMAIRNRGKRRIQPWMWWALIAVLVIAALFYIGNNSSLISSFQSFGF	1370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01248	1370	Coils	Coil	801	821	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	724	738	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	700	714	-	-
	Tsu01g01248	1370	Coils	Coil	1023	1043	-	-
	Tsu01g01248	1370	PANTHER	RNA-BINDING PROTEIN YLMH-RELATED	581	1370	-	-
	Tsu01g01248	1370	PANTHER	CALPONIN-LIKE DOMAIN PROTEIN	581	1370	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	763	779	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	573	779	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	1168	1193	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	1082	1102	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	637	658	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	381	405	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	1134	1193	-	-
	Tsu01g01248	1370	Coils	Coil	1189	1266	-	-
	Tsu01g01248	1370	Coils	Coil	860	880	-	-
	Tsu01g01248	1370	Coils	Coil	943	970	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	1225	1286	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	583	629	-	-
	Tsu01g01248	1370	MobiDBLite	consensus disorder prediction	1225	1257	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01248	Tsu-Chr1	11541376	11547629	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01248	-		-	mtr:MTR_1g035040	1330.08

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g01248	01	11541376	11547629	Tsu01g01248	01	11541376	11547629	ECH