Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0034 ATGGCGGAGCACTTGGCTTCCATCTTCGGCACCGAAAAGGACCGCGTGAACTGTCCGTTTTATTTCAAGATCGGTGCTTGTCGTCACGGAGATCGATGCTCGCGCCTCCACAATCGCCCCACGATCTCCCCAACGCTTCTCCTCTCCAACATGTATCAGCGTCCCGACATGATTACTCCAGGTGTAGACGCTCAAGGCCAGCCTATTGATCCCAGGAAGATTCAGGAACACTTTGAGGACTTCTACGAGGATATCTTTGAAGAGCTCGGCAAGTTCGGCGAGATCGAGAGTCTCAATGTTTGTGATAACCTGGCCGATCACATGATCGGTAATGTTTATGTTCAGTTCAAGGAGGAGGAGCAGGCGGCCGCTGCTTTGCAAGCTTTGCAGGGGCGGTTCTACTCCGGCCGCCCTATCATTGCGGATTTTTCTCCCGTTACCGACTTTCGTGAAGCAACGTGTCGCCAATTTGAGGAGAACAATTGCAACCGAGGGGGTTACTGTAACTTTATGCATGTGAAGCTTATTGGAAGGGATTTGAGGAGGAAGCTATTTGGGAGGTACAGCGGATATGGGAGAAGTCGAAGCCGGAGCAGGAGTTTGAGTCCACGTTACCGGAGGGATTCTGATAGGCGAAGGAGCGGGGACCGTGGAGATTACCGAGGAAATGGGCGACGGAGCGGGGATAAGCACGGGAGTGATGGGGGTCGAAGAAGACATGGCAGTCCCAGGCGGAGCAGGAGTCCGGTGAGAGAAGGGAGTGAGGAGCGCAGAGCGAGGATTGAGCTGTGGAATCGAGAAAGAGAGGAAAGGCAGTGA 819 0.5372 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELGKFGEIESLNVCDNLADHMIGNVYVQFKEEEQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRRKLFGRYSGYGRSRSRSRSLSPRYRRDSDRRRSGDRGDYRGNGRRSGDKHGSDGGRRRHGSPRRSRSPVREGSEERRARIELWNREREERQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0034 272 MobiDBLite consensus disorder prediction 246 272 - -
Vvi18g0034 272 MobiDBLite consensus disorder prediction 191 272 - -
Vvi18g0034 272 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
Vvi18g0034 272 PRINTS U2 auxiliary factor small subunit signature 165 177 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g0034 272 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g0034 272 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g0034 272 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g0034 272 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g0034 272 PRINTS U2 auxiliary factor small subunit signature 130 154 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g0034 272 Gene3D - 43 145 IPR012677 -
Vvi18g0034 272 SMART c3hfinal6 148 174 IPR000571 GO:0046872
Vvi18g0034 272 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Vvi18g0034 272 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 259 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g0034 272 SMART rrm2_1 73 142 IPR003954 GO:0003676
Vvi18g0034 272 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 38 IPR000571 GO:0046872
Vvi18g0034 272 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 173 IPR000571 GO:0046872
Vvi18g0034 272 FunFam Splicing factor U2AF small subunit 45 145 - -
Vvi18g0034 272 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Vvi18g0034 272 SUPERFAMILY RNA-binding domain, RBD 77 149 IPR035979 GO:0003676
Vvi18g0034 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 139 IPR000504 GO:0003723
Vvi18g0034 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 146 IPR000504 GO:0003723
Vvi18g0034 272 MobiDBLite consensus disorder prediction 201 236 - -
Vvi18g0034 272 CDD RRM_U2AF35B 44 145 - -
Vvi18g0034 272 Coils Coil 266 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0034 Vvi-Chr18 412259 413077 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0034 K12836 - vvi:100266834 421.779