Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1211 . . . . . Adu10g02923 . . . . . . . . . . . . . . . Arst3g00881 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu2g01802 . . . . . . . . . . . . . . . Mepo4g01324 . Mesa1g01495 . . . . . . . Phco8g03356 . . . . . Pste1g03803 . . Pte14g00251 . . . . Pvu3g0069 . . . . . Spst2g02202 . . . . . . . Trre1g01436 . . . . . . . Vimu11g00061 . . . Vivi4g03934 . .
Vvi1g1212 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g00987 . Car06g02169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g3997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1213 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g00990 . Car06g02170 . . . . . . . . . . . . . Gma08g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g3998 . . . . . . . . . . . . . . . . . . . Sto6g2536 . . . . . . . . . . . . . . . . . .
Vvi1g1214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1215 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1216 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g00994 . Car06g02175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g1190 . . . . . . . . . . . . . . . . . . .
Vvi1g1217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1220 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Gma Gma08g00865 Chr08 7131205 7134247 -
Vvi Vvi1g1211 Chr1 16922072 16922829 +
Adu Adu10g02923 Chr10 105555972 105558653 +
Arst Arst3g00881 Chr3 6444306 6447524 -
Lapu Lapu2g01802 Chr2 31695587 31707151 -
Mepo Mepo4g01324 Chr4 17286600 17292674 -
Mesa Mesa1g01495 Chr1 20952737 20954842 -
Phco Phco8g03356 Chr8 48170216 48174664 -
Pste Pste1g03803 Chr1 18858365 18876399 -
Pte Pte14g00251 Chr14 10400837 10405284 -
Pvu Pvu3g0069 Chr3 636152 640990 +
Spst Spst2g02202 Chr2 21185995 21190134 -
Trre Trre1g01436 Chr1 10838608 10843657 -
Vimu Vimu11g00061 Chr11 541008 545826 +
Vivi Vivi4g03934 Chr4 160170094 160175423 -
Vvi Vvi1g1212 Chr1 16927680 16929773 -
Bva Bva01g00987 Chr01 7660607 7665750 -
Car Car06g02169 Chr06 22172412 22175907 -
Psa Psa7g3997 Chr7 330368364 330371701 -
Vvi Vvi1g1213 Chr1 16963268 16969962 +
Bva Bva01g00990 Chr01 7685441 7695212 -
Car Car06g02170 Chr06 22193711 22197931 -
Gma Gma08g00865 Chr08 7131205 7134247 -
Psa Psa7g3998 Chr7 330497062 330500733 -
Sto Sto6g2536 Chr6 32313367 32316552 -
Vvi Vvi1g1214 Chr1 16976741 16987046 +
Vvi Vvi1g1215 Chr1 16995220 16995636 +
Vvi Vvi1g1216 Chr1 17020080 17056350 +
Bva Bva01g00994 Chr01 7727220 7736228 -
Car Car06g02175 Chr06 22229266 22237829 +
Sto Sto11g1190 Chr11 11846765 11864140 -
Vvi Vvi1g1217 Chr1 17060054 17060575 +
Vvi Vvi1g1218 Chr1 17064321 17064518 +
Vvi Vvi1g1219 Chr1 17065146 17066010 +
Vvi Vvi1g1220 Chr1 17127121 17127620 -