Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1212 ATGTCGGATCTTCAGGCTCCCTTGCGTCCCAAGAGGAAAAAAATTTGGGTGGACTATTTTGTTCACTTCCGATGGATTATTGTCATTTTTGTTGTCCTTCCTATCTCCTTCACTTTGTACTTCCTCACATATCTTGGAGATGTCAGATCTGAATCAAAATCTTTCAAGCAGCGTCAGGAGGAACATAATGAAAATGTCAAAAAAGTCATAAAACGTCTCAAAGAGAGGAACCCATCAAGGGATGGCCTTGTCTGCACAGCCCGGAAACCATGGATTGCTGTTGGAATGAGAAATGTTGACTATAAGCGGGCTCGGCATTTTGAAGTTGATCTTTCAGCTTTCAGAAATATCCTGGACATTGACAAAGAGAGAATGATTGCCAGATGTGAACCCCTAGTCAACATGGGGCAGATTAGCAGGGTTAGTGTCCCAATGAATCTTGCCCTTGCTGTGGTTGCTGAGCTTGATGATCTTACAGTTGGTGGCCTCATCAATGGCTATGGAATTGAAGGAAGCTCTCACATTTATGGCCTATTCTCTGACACTGTTGTGGCTTATGAAATCATTTTGGCTGATGGGCGGCTAGTTAGAGCTACCAAAGACAATGAGTACTCTGATCTTTTCTATGCTATTCCATGGTCTCAGGGAACACTGGGGCTTCTTGTTGCCGCTGAGATCAAGCTTATACCCATTAAGGAATACATGAAGTTGACTTACAAACCAGTAGTGGGAAATCTGAAAGACCTTGCGCAGGGTTATTTGGATTCTTTTGCTCCCAGAGACGGAGATCAGGATAATCCTGAGAAGGTTCCAGACTTTGTAGAAACCATGATTTACAATCCTACTGAAGCTGTGTGTATGACAGGGAGATATGCCTCAAAAGAAGAGGCTAAGAAGAAAGGAAATGTGATTAACAGTGTTGGGTGGTGGTACAAGCCCTGGTTCTATCAACATGCACAGACAGCCCTAAAGAAAGGGGAGTTTGTGGAGTACATCCCAACCAGGGAATATTACCATAGGCACACTAGGTGTCTGTATTGGGAGGGAAAACTTATTCTTCCATTTGCAGATCAATGGTGGTTTAGGTTTTTGTTTGGGTGGTTGATGCCACCAAAGGTTTCTCTCCTCAAGGCTACTCAAGGTGAAGCTATCAGAAACTATTACCATGAGATGCATGTAATTCAGGACATGCTTGTTCCGCTGTACAAAGTTGGGGATGCTCTAGAATGGGTACATCATGAGATGGAGGTATACCCAATTTGGCTCTGCCCACACCGATTGTACAAGCTTCCTGTCAAAACAATGATATATCCTGAACCAGGCTTTGAGCTGCATCGCAGACAGGGTGACACACATTATGCCCAGATGTACACAGATGTGGGGGTGTACTATGCGCCAGGGCCTGTCTTGAGGGGTGAGCAGTTTGATGGTGCAGAAGCAGTTCGCCGAATGGAGAACTGGTTGATTGAAAACCATGGATTCCAGCCACAATATGCAGTGTCTGAGCTGACTGAAAAGAACTTCTGGAGGATGTTTGATGCTGGGCTTTATGAGCACTGCAGAAAGAAGTATGGAGCAGTGGGGACTTTTATGAGTGTTTACTACAAATGCAAGAAGGGGAAGAAGACCGAGAAGGAAGTGCAGGAGGCGGAGCAAGCACAACTTGAGACACCTTATGCTGAGGCTGATTGA 1692 0.448 MSDLQAPLRPKRKKIWVDYFVHFRWIIVIFVVLPISFTLYFLTYLGDVRSESKSFKQRQEEHNENVKKVIKRLKERNPSRDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKERMIARCEPLVNMGQISRVSVPMNLALAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIILADGRLVRATKDNEYSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMKLTYKPVVGNLKDLAQGYLDSFAPRDGDQDNPEKVPDFVETMIYNPTEAVCMTGRYASKEEAKKKGNVINSVGWWYKPWFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRFLFGWLMPPKVSLLKATQGEAIRNYYHEMHVIQDMLVPLYKVGDALEWVHHEMEVYPIWLCPHRLYKLPVKTMIYPEPGFELHRRQGDTHYAQMYTDVGVYYAPGPVLRGEQFDGAEAVRRMENWLIENHGFQPQYAVSELTEKNFWRMFDAGLYEHCRKKYGAVGTFMSVYYKCKKGKKTEKEVQEAEQAQLETPYAEAD* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1212 563 ProSiteProfiles PCMH-type FAD-binding domain profile. 52 231 IPR016166 GO:0071949
Vvi1g1212 563 FunFam delta(24)-sterol reductase 118 289 - -
Vvi1g1212 563 PANTHER 24-DEHYDROCHOLESTEROL REDUCTASE 1 554 IPR040165 -
Vvi1g1212 563 Pfam FAD binding domain 109 198 IPR006094 GO:0050660
Vvi1g1212 563 Gene3D - 110 231 IPR016169 -
Vvi1g1212 563 SUPERFAMILY FAD-binding/transporter-associated domain-like 106 231 IPR036318 GO:0050660
Vvi1g1212 563 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1212 Vvi-Chr1 16927680 16929773 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1212 K09828 - vvi:100258158 1154.04