Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1220 ATGCAAAATAATTGGCCAACACTGGCCTGCCCAAGCGGCAACGGCACCAAGTTCTGGGCACATGAATGGAACAAACATGGGACCTGCTCAGAGTCCGTCCTCAGCCAACACCAGTACTTTAAAGCAGCTCTAGGCCTCAAGAAAGATGTAGATCTCCTCCAAATTCTTGAGAAAGCAGGAATTAAACCAAATGGAGAATCATACTGCTTGAAGAAAACTAAAAAAGCTATAAAAGATGCAGTTGGATTCACACCTTGGATACAGTGCAATGTGGCTCCATCGGGTAACAGACAGCTCTACCAGGTTTACGTTTGCGTGGACACTTCTGGGAAAAACTTTATCCAATGTCCAGTGATGCCCAAGGGGAAATGTGGTTCAAGCATTGAGTTTCCTTCATTCTAG 402 0.4502 MQNNWPTLACPSGNGTKFWAHEWNKHGTCSESVLSQHQYFKAALGLKKDVDLLQILEKAGIKPNGESYCLKKTKKAIKDAVGFTPWIQCNVAPSGNRQLYQVYVCVDTSGKNFIQCPVMPKGKCGSSIEFPSF* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1220 133 SUPERFAMILY Ribonuclease Rh-like 1 132 IPR036430 GO:0003723|GO:0033897
Vvi1g1220 133 ProSitePatterns Ribonuclease T2 family histidine active site 2. 18 29 IPR033130 -
Vvi1g1220 133 Pfam Ribonuclease T2 family 1 116 IPR001568 GO:0003723|GO:0033897
Vvi1g1220 133 PANTHER RIBONUCLEASE T2 1 126 IPR001568 GO:0003723|GO:0033897
Vvi1g1220 133 Gene3D - 1 133 IPR036430 GO:0003723|GO:0033897
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1220 Vvi-Chr1 17127121 17127620 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1220 K01166 - vvi:100266770 288.885