Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1213 ATGGCTGCCTCCAAAACCCTAATGGATTATCTCCAACCCTCCAAGCGCCTAAAAGTCTCCACCCCCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCAAAAGCCTACTCCTCCCTGTTTCTTCTCTTTCCCATTCCCAATCCCAAGACCCCCACCAAAGCCCTCCTTCCTCTCCCTCCTCCGCCCTCACCGCCCACCAAAAATCCCGGATCGAATTCAACAAATTCCTTGCAAAATCCAAGAGAAATCTCACCATATGCTCCCAGAAAGTCTCCAAATCTAAAGCTGAAGGGGTTGGTTTTGTGGAATTGGAGGACCTCTTGTTGGAAGAGACGTGGTTGGATGCGCTTCCTGGGGAGTTTCAGAAGCCCTATGCCAAGACGCTCTGCAGATTTTTGGAACGGGAGGTGTGCGGCAGTGGCGTGCCCATTTATCCTCCACAGCACTTGATCTTCAATGCTCTTAACTCCACGCCATTCGACAGGGTCAAGGCTGTGATTATTGGACAGGATCCATATCATGGCCCTGGTCAAGCAATGGGCCTTTCATTTTCTGTGCCAGAGGGGGTGAAAGTTCCTTCAAGTCTGGTAAATATATTTAAGGAACTACAGCAAGATTTAGGCTGTTCAATTCCATCTCATGGGAATTTGGAGAAATGGGCTGTACAGGGTGTTCTGTTGCTCAACGCTGTTCTTACTGTTAGGAGTCATCAAGCTAATTCTCATGCAAAGAAAGGATGGGAGCAATTTACTGATTCTGTCATTAGAACAATTTCACAAAAGCAAAGAGGAGTTGTTTTCCTTCTATGGGGAAACTCTGCTCAAGAGAAATCCAGGTTGATTGATGACACGAAGCACCACATACTCAAAGCTGCACATCCTTCTGGTTTATCCGCAAACAGAGGTTTCTTTGGATGCAGGCATTTTTCTCGCACAAACAAGATTCTGGAGCAAAAGGGAGTACCCCCCATTGATTGGCAACTTTGA 987 0.4772 MAASKTLMDYLQPSKRLKVSTPTSSSSSSSSSPKSLLLPVSSLSHSQSQDPHQSPPSSPSSALTAHQKSRIEFNKFLAKSKRNLTICSQKVSKSKAEGVGFVELEDLLLEETWLDALPGEFQKPYAKTLCRFLEREVCGSGVPIYPPQHLIFNALNSTPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGVKVPSSLVNIFKELQQDLGCSIPSHGNLEKWAVQGVLLLNAVLTVRSHQANSHAKKGWEQFTDSVIRTISQKQRGVVFLLWGNSAQEKSRLIDDTKHHILKAAHPSGLSANRGFFGCRHFSRTNKILEQKGVPPIDWQL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1213 328 PANTHER URACIL-DNA GLYCOSYLASE 20 328 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vvi1g1213 328 Gene3D - 88 328 IPR036895 -
Vvi1g1213 328 FunFam Uracil-DNA glycosylase 103 328 - -
Vvi1g1213 328 MobiDBLite consensus disorder prediction 1 64 - -
Vvi1g1213 328 SMART UDG_2_a 156 316 - -
Vvi1g1213 328 SUPERFAMILY Uracil-DNA glycosylase-like 108 328 IPR036895 -
Vvi1g1213 328 NCBIfam uracil-DNA glycosylase 111 320 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vvi1g1213 328 Hamap Uracil-DNA glycosylase [ung]. 110 327 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vvi1g1213 328 ProSitePatterns Uracil-DNA glycosylase signature. 164 173 IPR018085 GO:0006281|GO:0016799
Vvi1g1213 328 CDD UDG-F1-like 125 326 IPR002043 GO:0004844|GO:0006281|GO:0006284
Vvi1g1213 328 Pfam Uracil DNA glycosylase superfamily 161 315 IPR005122 -
Vvi1g1213 328 MobiDBLite consensus disorder prediction 16 64 - -
Vvi1g1213 328 SMART UDG_2 156 316 IPR005122 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1213 K03648 - vvi:100253025 551.592