LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g0790	ATGGCCTTCTACAGCTCTCACTTTCTGGGTCTCTTTGCTCTTCTTCTTCTTAGATCTTCTAAAGTTACATGCGAAGAAGCAGTTTCAGTTTCTCCAACTATTGACATTTCACTCAATCGGAACTCTTTCCCTGAAGGCTTCATCTTTGGAGCTGGATCTTCCTCCTACCAGTTCGAAGGTGCAGCAATGGAAGGTGGTAGAGGAGCAAGTGTATGGGATACTTTCACTCATAAATATCCAGGTAAGATCCAGGATAGAAGCAACGGAGACGTGGCCATCGACTCATATCATCTTTACAAGGAAGATGTTGGAATGATGAAGGATGCGAATTTGGATTCATACAGATTTTCCATATCTTGGTCAAGGATTCTTCCCAAAGGAAAACTAAGTGGAGGAATAAATCAAGAAGGAATAAACTACTACAACAACCTTATCAATGAGCTACTCGCTAATGGTATAAAACCATTTGTGACTATTTTTCACTGGGATCTTCCCCAAGCACTAGAAGACGAGTATGGTGGTTTCTTAAGTCCATTGATAGTGAAGGATTTTCGAGATTATGCAGAACTTTGCTTCAAGGAATTTGGTGATAGGGTGAAGTATTGGGTTACATTGAATGAGCCGTGGAGTTACAGTCAAAATGGCTATGCAAATGGAGGGATGGCACCAGGTCGTTGTTCTGCATGGATGAATTCAAATTGCACTGGTGGTGATTCTGCAACGGAGCCATATTTGGTTACACATCACCAACTTCTTGCTCATGCAGCAGCTGTTCGTGTCTACAAGACCAAGTATCAGACAACTCAAAAGGGTGTGATAGGCATAACCTTGGTAGCCAATTGGTTTTTGCCACTCAGAGATACCAAATCTGATCAAAAGGCTGCTGAAAGAGCAATTGACTTCATGTATGGATGGTTTATGAATCCATTAACTTTTGGTGACTATCCAAAAAGTATGAGATCACTTGTGAGAACAAGATTGCCAAAGTTCACCACAGAGCAAGCTAGATTACTTGTTGGTTCATTCGATTTTATTGGCCTAAACTATTACTCTACAACATATTCCTCTGATGCACCTCAACTAAGCAATGCCAACCCTAGCTACATAACTGATTCTCTTGTCACTGCTTCATTTGAACGTGATGGGAAACCTATTGGAATAAAGATTGCTTCTGATTGGCTATATGTTTATCCAAAAGGAATTCGTGATCTTTTATTATATACCAAGGAAAAGTACAATAATCCTTTGATTTACATCACAGAGAATGGTGTAAATGAGTATAATGAACCCTCTTTATCACTTGAAGAATCTCTCATGGATACTTTCAGAATTGATTATCATTATCGTCATCTCTATTATCTTCTATCGGCAATTAGGAATGGCGCAAATGTAAAAGGGTATTATGTATGGTCTTTCTTCGACAATTTTGAGTGGTCTTCAGGCTATACATCACGATTCGGAATGATCTTCATAGATTATAAAAATGGGTTGAAAAGATATAACAAACTCTCGGCAATGTGGTACAAGAACTTCCTCGAGAAAGAAACCAAACTCTATGACTCTAGTAAATAA	1572	0.3899	MAFYSSHFLGLFALLLLRSSKVTCEEAVSVSPTIDISLNRNSFPEGFIFGAGSSSYQFEGAAMEGGRGASVWDTFTHKYPGKIQDRSNGDVAIDSYHLYKEDVGMMKDANLDSYRFSISWSRILPKGKLSGGINQEGINYYNNLINELLANGIKPFVTIFHWDLPQALEDEYGGFLSPLIVKDFRDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGGMAPGRCSAWMNSNCTGGDSATEPYLVTHHQLLAHAAAVRVYKTKYQTTQKGVIGITLVANWFLPLRDTKSDQKAAERAIDFMYGWFMNPLTFGDYPKSMRSLVRTRLPKFTTEQARLLVGSFDFIGLNYYSTTYSSDAPQLSNANPSYITDSLVTASFERDGKPIGIKIASDWLYVYPKGIRDLLLYTKEKYNNPLIYITENGVNEYNEPSLSLEESLMDTFRIDYHYRHLYYLLSAIRNGANVKGYYVWSFFDNFEWSSGYTSRFGMIFIDYKNGLKRYNKLSAMWYKNFLEKETKLYDSSK*	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g0790	523	Pfam	Glycosyl hydrolase family 1	40	515	IPR001360	GO:0004553\|GO:0005975
	Pvu1g0790	523	Gene3D	Glycosidases	28	514	-	-
	Pvu1g0790	523	PRINTS	Glycosyl hydrolase family 1 signature	341	355	IPR001360	GO:0004553\|GO:0005975
	Pvu1g0790	523	PRINTS	Glycosyl hydrolase family 1 signature	417	425	IPR001360	GO:0004553\|GO:0005975
	Pvu1g0790	523	PRINTS	Glycosyl hydrolase family 1 signature	440	451	IPR001360	GO:0004553\|GO:0005975
	Pvu1g0790	523	PRINTS	Glycosyl hydrolase family 1 signature	461	478	IPR001360	GO:0004553\|GO:0005975
	Pvu1g0790	523	PRINTS	Glycosyl hydrolase family 1 signature	485	497	IPR001360	GO:0004553\|GO:0005975
	Pvu1g0790	523	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	7	519	-	-
	Pvu1g0790	523	PANTHER	GLYCOSYL HYDROLASE	7	519	IPR001360	GO:0004553\|GO:0005975
	Pvu1g0790	523	ProSitePatterns	Glycosyl hydrolases family 1 active site.	417	425	IPR018120	-
	Pvu1g0790	523	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	47	61	IPR033132	-
	Pvu1g0790	523	SUPERFAMILY	(Trans)glycosidases	38	513	IPR017853	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g0790	Pvu-Chr1	11072585	11075717	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g0790	5	517	Glycoside Hydrolase	AT5G44640	53.696	0.0	583

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g0790	-		K01188	gmx:100777247	942.569