Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5319 ATGTCGAACTCTCTCTCGTTAACGTTCTCGGCGCTGAATAACCCTCAGCTGAGCGCTCTCATCAACCCTGGTGGAGCGCGTGCACGAGCGCGTCCGCTGGCGAGCGTGAGGAACAGCACGGCGTCGCGATGGCTGGGGACCCGGTTGCGTTCGAGCGGGTCGGAGAGGATCCAGTTTTGGCACTCTGGCGGGCCGGGGCGGATGCCGAAGCTTAGGGTGGCGGTCCGGTCGGCATTCTCGGCGGTGCCGGAGAAGCCGCTGGGGCTTTACGATCCGGCGATGGATAAGGACTCTTGCGGGGTCGGATTCGTGGCGGAGCTGTCTGGTCAAAGCAGTCGCAAAACGGTTACTGATGCGTTGGAGATGTTGGTGCGCATGACGCACAGAGGAGCTTGCGGTTGTGAAACCAATACTGGAGATGGTGCAGGCATCCTTGTTGCTCTGCCTCATGCGTTTTTCAAAGAGGTTGTGGATTTTGAGCTTCCTCCCCATGGACAATATGCTGTTGGCATGTTTTTCTTGCCCAAATCTGATAACCGTAGGAAGGAAAGCAAAAATATATTTAGAAAGGTTGCTGAATCTATGGGGCTTTCAATTCTTGGTTGGCGTTCTGTGCGCACAGACAACACAGGATTGGGCAAATCAGCCCTTCAAACTGAACCAGTGATCGAGCAGGTGTTCCTTACTGCAAGTGGTAAATCAAAAGTTGATCTGGAAAGACAGATGTACATATTAAGGAAGCTGAGCATGGCTGCTATTACATCTGCGTTAAACCTGCAAAATGACGGCATTGCAGATTTTTATATCTGTTCACTTTCATCAAGGACTGTCGTTTACAAAGGTCAGCTAACACCGGCTCAGTTGAGGGAATATTATTATGCAGACCTTGGCAATGAAAGGTTTACGAGCTACATGGCCCTGATACATTCACGATTTTCTACGAATACCTTTCCTAGCTGGGATCGTGCTCAACCTATGCGTGTATTGGGCCACAATGGAGAAATTAATACACTCAGGGGCAATGTTAACTGGATGAAGGCACGTGAGGGCTTATTGAAATGCAAGGAGCTTGGCTTATCAGAGAACGAGTTAAAGAAGCTTTTACCGATTGTGGATGCGAATTCTTCAGATTCAGGAGCTTTTGATGGCGTGCTCGAGTTTTTGGTTCATTCTGGAAAAAGTCTTCCTGAAGCTGTTATGATGATGATTCCTGAAGCATGGCAAAAGGACAAGAACATGGATCCCCAGCGTAAAGCATTTTACGAATACTATTCGGCTCTCATGGAGCCTTGGGATGGACCAGCTCTTATATCATTTACCGACGGCCACTATCTTGGAGCTACATTGGACAGGAATGGATTGCGACCGGGCCGCTTCTATGTCACCCATAGTGGACGAGTAATAATGGCAAGTGAAGTTGGGGTTGTAGACATTCCTCCAGAAGACGTACGTAGGAAAGGAAGATTAAATCCTGGCATGATGCTTCTGGTGGATTTTGAGAAGCATATAGTTGTAAATGATGATGCCTTAAAGGAACAATATTCATTGGAAAGACCCTATGGGGATTGGCTCAAAAAGCAAAAGATTGATCTCAAAGACATAGTTGACTCAGTTCATGAGTCTGAAAGAGTGCCCCCAACCATAACAGGAGTGGCTCCACTATCGTGTGATGATGTGGATATGGAAAATATGGGAATTCACGGTTTACTAGCTCCATTGAAAGTTTTTGGATATACAGTTGAATCATTGGAAATGCTGTTACTTCCTATGGCAAAAGATGGGGTAGAAGCCCTTGGGTCAATGGGAAATGACACTCCATTAGCTGTCATGTCTAATAGAGAAAAACTTTCTTTTGAGTATTTCAAGCAAATGTTTGCTCAAGTTACAAACCCTCCTATTGATCCCATCCGAGAGAAAATCGTCACCTCTATGGAATGTATGGTCGGTCCAGAAGGTGATCTCACAGAAACCACTGAGGAACAGTGCCACCGCCTTTCACTAAAAGGTCCCCTCTTATCCACTGAACAAATGGAGGCCATTAAAAAAATGGATTATAGGGGATGGCGGAGCAAAGTTATAGACATAACTTACTCAAAGGAACGCGGTAAGAGAGGGTTGGAGGAAGCCTTGGACAGGATATGTGCAGAAGCACACGGTGCAATTAAAGAAGGCTACACCACCCTTGTGCTTTCTGATAGAGCATTCTCAAGGAAACGTGTTGCTGTGAGCTCCCTCCTGGCTGTTGGTGCTGTCCATCAACATCTTGTGAAAACACTTGAGCGCACTAGAGTTGCCTTGATGATTGAATCTGCTGAGCCGCGTGAAGTGCACCATTTCTGCACTCTTGTTGGTTTTGGTGCTGATGCTATATGCCCATATTTGTCTATAGAGGCAATTTGGCGACTGCAGGTTGACGGAAAGATCCCACCAAAAGCAAATGGTGTATTCCACTCAAAAGATGAGTTGGTTAAGAAATATTTCAAAGCAAGTCACTATGGAATGATGAAGGTTCTTGCTAAGATGGGAATATCAACTTTAGCCTCGTACAAAGGTGCTCAGATTTTTGAAGCTCTGGGTCTTTCATCAGAAGTGATTGATAAGTGCTTTGCTGGAACTCCAAGTCGAGTTGAGGGCGCAACATTTGAGATGCTCTCTTCTGACGCTCTTCAACTGCATGAGTTGGCTTTTCCTTCACGGACTTTCTCTCCTGGAAGTGCAGAAGCTGTAGCATTGCCAAATCCCGGGGATTATCATTGGAGAAAAGGTGGTGAAGTTCACCTGAACGATCCACTTGCAATAGCCAAGCTTCAAGAGGCTGCTAGAACTAATAGTGTAGATGCATATAAACAGTATTCCAAGATCATTCATGAACTAAATAAGGCTTGCAATTTGCGAGGGCTTTTGAAATTTAAAGAGACATCAGCTAAGATTTCTATAGATGAAGTTGAACCTGCTAGTGAAATAGTTAAACGGTTTTGCACCGGGGCCATGAGTTATGGGTCTATATCACTGGAGGCTCACTCAACTTTAGCATTGGCTATGAATAAAATTGGAGGAAAATCCAACACAGGTGAGGGAGGTGAGCAACCATCTCGCATGGAGCCTCTTGCTGATGGCTCTAGGAATCCCAAAAGGAGTGCCATCAAACAGGTCGCGAGTGGGAGATTTGGAGTTTCAAGTTACTACCTTACGAATGCTGATGAGCTGCAGATAAAGATGGCTCAGGGAGCAAAACCTGGTGAGGGAGGTGAACTTCCTGGACACAAGGTTGTAGGAGACATTGCTGTCACTAGGAATTCAACTGCTGGGGTAGGGCTTATCAGTCCACCTCCCCATCATGATATTTATTCAATTGAAGACCTTGCCCAGCTAATTCATGATCTAAAGAATGCCAACCCAGCTGCTCGAATTAGTGTGAAATTAGTATCTGAAGCTGGAGTGGGGATAATTGCTAGTGGAGTTGTTAAAGGTCATGCAGATCATGTCTTGATCTCAGGCCATGATGGAGGTACCGGGGCATCCAGATGGACTGGCATAAAGAATGCTGGGTTACCATGGGAACTCGGCCTGGCCGAGACCCACCAGACATTGGTTGCAAATGACCTACGTGGTAGAACGGTTCTCCAAACTGATGGGCAACTGAAAACCGGAAGAGATGTTGCGATTGCGGCTCTTCTTGGTGCGGAAGAGTTTGGCTTCAGTACTGCTCCACTCATTACTCTTGGCTGCATCATGATGCGGAAGTGCCACAAGAACACCTGTCCTGTTGGCATTGCTACCCAAGATCCAGTACTTAGGGAGAAGTTTGCTGGAGAACCTGAGCATGTTATTAATTTCTTTTTTATGGTGGCTGAAGAGATGAGAGAAATAATGGCCCAGCTTGGGTTTAGAACAGTTAATGAGATGGTTGGCCATTCTGATATGCTTGAAGTTGATAAAGAAGTTGTTAAAAGCAATGAGAAACTAGAGAACATTGACCTCTCCCTATTGCTTAGACCTGCAGCTGAACTGCGGCCAGAAGCCGCTCAATACTGTGTGCAAAAGCAAGATCACAGTTTGGACATGGCCTTGGATAATCAGCTCATAAGTTTGTCAAGTGCTGCTTTGGAGAAGGGTCTCCCAGTATACATTGAAACACCAATCTATAACGTAAACCGTGCTGTGGGAACTATGCTTAGCCATGAGGTGACCAAGAGGTACCACTTAGCTGGTCTTCCAACTGACACCATCCACATCAAATTTAATGGTAGCGCGGGCCAGAGCTTTGGTGCATTCCTCTGTCCTGGTATTACTTTGGAACTAGAAGGTGATAGCAATGACTATGTTGGTAAAGGATTGTCCGGTGGAAAGGTTGTAGTATATCCGCCAAAAGGAAGCAATTTTGACCCTAAGGAGAACATTGTGATTGGCAATGTGGCACTGTATGGGGCAACACGTGGTGAAGCATATTTCAACGGGATGGCAGCAGAAAGATTTTGTGTGCGGAATTCTGGGGCTAAGGCTGTTGTGGAAGGTGTTGGTGATCATGGATGTGAGTACATGACTGGCGGGACTGTTGTTGTGCTTGGGAAAACTGGTAGAAATTTTGCTGCTGGTATGAGTGGCGGGATTGCTTATGTTCTTAATGCGGATGGAAAATTCCAATCTCGATGCAACCTGGAGCTCGTAGATCTGGATAAGGTTGAAGAGGAGGAGGACATTGTTACTCTCAAAATGTTGATACAGCAACATCAACGACACACAAATAGTCTGCTTGCCAAAGAAGTGCTTGATAATTTTGGGAATCTTCTTCCTAAATTTGTCAAGGTGATCCCGAGGGAGTATAAACGTGTTCTTGCAAGTATGAAGTCTGAGGAAGCCTCCAAAGATGCAGTGGAGCGCACTGCTAAAGATGCAGAAGAAGAAGATGATGAAGCACAAGCAGTGGAGAAAGATGCTTTTGAGGAGCTTAAGAAATTGGCAACTGCATCATTGAAAGAGAAACAGAGTGAGGCTGAATCACCCAAGAGGCCAAGTCAAGTAACTGAAGCCATTAAACATAGAGGTTTCGTGGCTTATGAGCGTGAGGGTGTTCAGTATAGGGATCCGAATGTGCGCATGAACGATTGGAAGGAAGTGATGGAGGAGACAAAGCCTGGTCCACTTCTGAAAACACAGTCAGCCCGTTGCATGGACTGTGGAACTCCTTTTTGTCATCAGGAAAATTCTGGATGTCCCCTAGGAAATAAAATACCAGAATTCAATGAGTTAGTGTACCAAAATAGGTGGCGCGAAGCATTAGATAGGCTTCTTGAAACAAACAACTTTCCAGAGTTTACTGGTCGGGTGTGCCCAGCTCCTTGTGAAGGTTCCTGTGTCCTTGGTATTATTGAGAATCCTGTATCTATTAAAAGCATTGAATGTGCAATCATAGACAAGGCTTTTGAGGAGGGTTGGATGGTGCCACGACCTCCAGCCAAAAGAACAGGGAAAAGAGTAGCTGTCGTTGGAAGTGGACCAGCTGGCTTGGCAGCTGCTGATCAGCTGAACAAAATGGGTCACACAGTAACAGTATTTGAAAGAGCGGATCGGATTGGAGGGCTTATGATGTATGGGGTTCCCAACATGAAAACTGACAAAGTGAATATAGTTCAAAGGCGAGTCAATCTTATGGCTGAGGAAGGAATAGATTTTGTGGTAAATGCTAATGTTGGACTCGATCCTATATATTCTCTTGATCGGCTTCGAGAGGAAAATGATGCAATTGTGTTGTCTGTAGGAGCCACAAAACCAAGGGATCTTCCAGTACCTGGAAGGGAGCTGTCAGGAGTTCATTTTGCAATGGAGTTTCTCCATGCAAATACTAAAAGCTTGCTTGATAGCAATCTCCAGGATGGCAACTATATTTCTGCCAAGGGCAAGAAAGTTGTTGTCATTGGTGGGGGTGACACTGGCACTGATTGCATAGGAACATCCATTCGCCACGGATGTAGCAACATTGTAAATCTTGAACTTCTCCCTCAGCCGCCACAAACTAGGGCTCCAGGCAACCCATGGCCCCAGTGGCCTCGTGTATTCCGTGTTGATTACGGGCACCAAGAAGCTGCAGCTAAGTTTGGCAATGATCCAAGAACTTATGAGGTATTGACTAAGCGGTTTGTGGGAGATGAGAATGGAGCTGTGAAAGGGCTTGAAGTGGTACATGTTCGCTGGGAGAAGGATGAAATGGGAAAGTTTCAGTTTAAGGAAATTGAGGGCAGTGAGGAGATTATTGAGGCTGACCTAGTTTTCCTTGCCATGGGATTCCTAGGCCCTGAGTCTACAATTGCAGAGAAGTTGGGTGTGGAGCGAGACAACAGGTCAAACTTCAAGGCTGATTACGGTCGCTTCTCAACCAGTGTCAATGGTGTGTTTGCCGCTGGAGACTGTCGCCGGGGTCAGTCCCTTGTGGTGTGGGCTATTTCAGAGGGACGGCAAGCTGCAGCACAAGTTGACAACTATCTCACCAAAGAGGACCGAGAGCACGGTATTGATGCGGAGCATGTCAAGAGGCAAGAGGGCCTCAATAAGAAGCACCAAGGCAGCAGCGGCAAACACACAGTGATGACTTAG 6591 0.4617 MSNSLSLTFSALNNPQLSALINPGGARARARPLASVRNSTASRWLGTRLRSSGSERIQFWHSGGPGRMPKLRVAVRSAFSAVPEKPLGLYDPAMDKDSCGVGFVAELSGQSSRKTVTDALEMLVRMTHRGACGCETNTGDGAGILVALPHAFFKEVVDFELPPHGQYAVGMFFLPKSDNRRKESKNIFRKVAESMGLSILGWRSVRTDNTGLGKSALQTEPVIEQVFLTASGKSKVDLERQMYILRKLSMAAITSALNLQNDGIADFYICSLSSRTVVYKGQLTPAQLREYYYADLGNERFTSYMALIHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKAREGLLKCKELGLSENELKKLLPIVDANSSDSGAFDGVLEFLVHSGKSLPEAVMMMIPEAWQKDKNMDPQRKAFYEYYSALMEPWDGPALISFTDGHYLGATLDRNGLRPGRFYVTHSGRVIMASEVGVVDIPPEDVRRKGRLNPGMMLLVDFEKHIVVNDDALKEQYSLERPYGDWLKKQKIDLKDIVDSVHESERVPPTITGVAPLSCDDVDMENMGIHGLLAPLKVFGYTVESLEMLLLPMAKDGVEALGSMGNDTPLAVMSNREKLSFEYFKQMFAQVTNPPIDPIREKIVTSMECMVGPEGDLTETTEEQCHRLSLKGPLLSTEQMEAIKKMDYRGWRSKVIDITYSKERGKRGLEEALDRICAEAHGAIKEGYTTLVLSDRAFSRKRVAVSSLLAVGAVHQHLVKTLERTRVALMIESAEPREVHHFCTLVGFGADAICPYLSIEAIWRLQVDGKIPPKANGVFHSKDELVKKYFKASHYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIDKCFAGTPSRVEGATFEMLSSDALQLHELAFPSRTFSPGSAEAVALPNPGDYHWRKGGEVHLNDPLAIAKLQEAARTNSVDAYKQYSKIIHELNKACNLRGLLKFKETSAKISIDEVEPASEIVKRFCTGAMSYGSISLEAHSTLALAMNKIGGKSNTGEGGEQPSRMEPLADGSRNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGELPGHKVVGDIAVTRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPAARISVKLVSEAGVGIIASGVVKGHADHVLISGHDGGTGASRWTGIKNAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEHVINFFFMVAEEMREIMAQLGFRTVNEMVGHSDMLEVDKEVVKSNEKLENIDLSLLLRPAAELRPEAAQYCVQKQDHSLDMALDNQLISLSSAALEKGLPVYIETPIYNVNRAVGTMLSHEVTKRYHLAGLPTDTIHIKFNGSAGQSFGAFLCPGITLELEGDSNDYVGKGLSGGKVVVYPPKGSNFDPKENIVIGNVALYGATRGEAYFNGMAAERFCVRNSGAKAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGIAYVLNADGKFQSRCNLELVDLDKVEEEEDIVTLKMLIQQHQRHTNSLLAKEVLDNFGNLLPKFVKVIPREYKRVLASMKSEEASKDAVERTAKDAEEEDDEAQAVEKDAFEELKKLATASLKEKQSEAESPKRPSQVTEAIKHRGFVAYEREGVQYRDPNVRMNDWKEVMEETKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVYQNRWREALDRLLETNNFPEFTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKAFEEGWMVPRPPAKRTGKRVAVVGSGPAGLAAADQLNKMGHTVTVFERADRIGGLMMYGVPNMKTDKVNIVQRRVNLMAEEGIDFVVNANVGLDPIYSLDRLREENDAIVLSVGATKPRDLPVPGRELSGVHFAMEFLHANTKSLLDSNLQDGNYISAKGKKVVVIGGGDTGTDCIGTSIRHGCSNIVNLELLPQPPQTRAPGNPWPQWPRVFRVDYGHQEAAAKFGNDPRTYEVLTKRFVGDENGAVKGLEVVHVRWEKDEMGKFQFKEIEGSEEIIEADLVFLAMGFLGPESTIAEKLGVERDNRSNFKADYGRFSTSVNGVFAAGDCRRGQSLVVWAISEGRQAAAQVDNYLTKEDREHGIDAEHVKRQEGLNKKHQGSSGKHTVMT* 2197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5319 2196 Pfam Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1700 1811 IPR028261 -
Lja1g5319 2196 MobiDBLite consensus disorder prediction 1020 1043 - -
Lja1g5319 2196 Pfam Glutamate synthase central domain 573 861 IPR006982 GO:0006807|GO:0015930
Lja1g5319 2196 Gene3D - 1933 2094 IPR036188 -
Lja1g5319 2196 PRINTS Adrenodoxin reductase family signature 1891 1901 - -
Lja1g5319 2196 PRINTS Adrenodoxin reductase family signature 1825 1847 - -
Lja1g5319 2196 PRINTS Adrenodoxin reductase family signature 1848 1861 - -
Lja1g5319 2196 PRINTS Adrenodoxin reductase family signature 1969 1983 - -
Lja1g5319 2196 Gene3D - 1824 1932 - -
Lja1g5319 2196 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1349 1613 IPR036485 GO:0016491
Lja1g5319 2196 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 99 526 IPR029055 -
Lja1g5319 2196 Gene3D Aldolase class I 913 1352 IPR013785 -
Lja1g5319 2196 Coils Coil 1615 1645 - -
Lja1g5319 2196 SUPERFAMILY alpha-helical ferredoxin 1677 1834 - -
Lja1g5319 2196 PANTHER GLUTAMATE SYNTHASE 1 [NADH], CHLOROPLASTIC 77 2167 - -
Lja1g5319 2196 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 99 500 IPR017932 -
Lja1g5319 2196 TIGRFAM GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1679 2163 IPR006005 GO:0006537|GO:0016639
Lja1g5319 2196 SUPERFAMILY FMN-linked oxidoreductases 568 1331 - -
Lja1g5319 2196 SUPERFAMILY FAD/NAD(P)-binding domain 1821 2161 IPR036188 -
Lja1g5319 2196 Gene3D - 1353 1622 IPR036485 GO:0016491
Lja1g5319 2196 Pfam Pyridine nucleotide-disulphide oxidoreductase 1824 2150 IPR023753 GO:0016491
Lja1g5319 2196 MobiDBLite consensus disorder prediction 1619 1641 - -
Lja1g5319 2196 Pfam GXGXG motif 1380 1566 IPR002489 GO:0016491
Lja1g5319 2196 CDD GltS 99 518 - -
Lja1g5319 2196 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 99 535 IPR029055 -
Lja1g5319 2196 CDD gltB_C 1357 1606 IPR002489 GO:0016491
Lja1g5319 2196 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 77 2167 - -
Lja1g5319 2196 PIRSF GOGAT 29 2187 IPR012220 GO:0005506|GO:0006537|GO:0010181|GO:0016040|GO:0050660
Lja1g5319 2196 CDD GltS_FMN 930 1309 IPR002932 GO:0006537|GO:0015930|GO:0016638
Lja1g5319 2196 Pfam Conserved region in glutamate synthase 928 1297 IPR002932 GO:0006537|GO:0015930|GO:0016638
Lja1g5319 2196 Gene3D Aldolase class I 554 912 IPR013785 -
Lja1g5319 2196 Gene3D - 1623 1823 IPR009051 GO:0051536
Lja1g5319 2196 Pfam Glutamine amidotransferases class-II 99 523 IPR017932 -
Lja1g5319 2196 MobiDBLite consensus disorder prediction 2173 2196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5319 Lja-Chr1 83600758 83612813 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5319 K00264 - gmx:100809905 3942.12