Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0711 . . . . . Ahy16g3583 . . . Amo16g3901 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g5186 Mepo4g00934 . . Mtr1g0809 . Phco2g00787 . . . . . . . . Sto5g1258 Tpr1g3162 Trre1g00986 Tsu01g00933 . . Vimu1g01881 . Vivi4g04744 Vra6g1182
Pvu1g0712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0713 . . . . . . . . . . . . . . . . . . . . . . . . . Gso13g0178 . . . . . . . . . . . . Lja1g5721 . . . . . . . . . . . . . . . . Tpr1g3160 . Tsu01g00936 . . . . . .
Pvu1g0714 . . . . . Ahy16g3579 Ahy6g2826 . . Amo16g3900 . . . . . . Car04g02986 . . . . . . . . . . . . . . . . . . . . . Lja1g5720 Mal1g5185 Mepo4g00933 . . Mtr1g0808 . . . Psa6g0888 . . . . . . . Tpr1g3159 . Tsu01g00935 . . . . . Vra6g1181
Pvu1g0715 . . . . . Ahy16g3578 . . . Amo16g3899 . . . . Bisa05g0342 . Car04g02987 . . . . . . . . Gso13g0177 . . . . . . . . . . . . Lja1g5719 Mal1g5184 . . . Mtr1g0807 . . . Psa6g0887 . . . . . . Sto5g1254 Tpr1g3158 . Tsu01g00934 . . Vimu1g02087 . Vivi4g04730 Vra6g1576
Pvu1g0716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g5183 . . . Mtr1g0804 . . . Psa6g0881 . . . . . . Sto5g1253 Tpr1g3006 . Tsu01g00933 . . . . . Vra6g1577
Pvu1g0717 . . . . . . . . . Amo16g3896 . . . . . . . . . . . . . . Gso19g0609 Gso13g0176 . . . . . . . . . . . . . . . . . Mtr1g0803 . . . . . . . . . . Sto5g1252 Tpr1g3155 . Tsu01g00932 . . . . . Vra6g1176
Pvu1g0718 . . . . . . Ahy6g2825 . . Amo16g3895 . . . . . . Car04g02989 . . . . . . . . Gso13g0174 . . . . . . . . . . . . . Mal1g5179 . . . Mtr1g0802 Phac1g01038 Phco2g00790 . Psa6g0879 . . . . . . Sto5g1251 Tpr1g3153 . Tsu01g00931 . . Vimu1g01874 . Vivi4g04728 Vra6g1578
Pvu1g0719 . . . . . . . . . . . . . . . . . . . . . . . . . Gso13g0173 . . . . . . . . . . . . . Mal1g5163 . . . . . . . . . . . . . . Sto5g1249 . . Tsu01g00939 . . . . . Vra6g1401
Pvu1g0720 . . . . . . . . . Amo16g3520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal1g5161 . . . . . . . . . . . . . . . Tpr1g3144 . Tsu01g00929 . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Tsu Tsu01g00939 Chr01 8592031 8594424 -
Pvu Pvu1g0711 Chr1 8995405 8996156 +
Ahy Ahy16g3583 Chr16 153457748 153458877 -
Amo Amo16g3901 Chr16 150807687 150814931 +
Mal Mal1g5186 Chr1 124553583 124554613 -
Mepo Mepo4g00934 Chr4 12154058 12155156 +
Mtr Mtr1g0809 Chr1 9141588 9165626 +
Phco Phco2g00787 Chr2 8683126 8685593 +
Sto Sto5g1258 Chr5 8523834 8527185 -
Tpr Tpr1g3162 Chr1 36090836 36093772 +
Trre Trre1g00986 Chr1 7471236 7475747 +
Tsu Tsu01g00933 Chr01 8555051 8561756 +
Vimu Vimu1g01881 Chr1 23403649 23404506 -
Vivi Vivi4g04744 Chr4 176572172 176577388 +
Vra Vra6g1182 Chr6 20190857 20194798 -
Pvu Pvu1g0712 Chr1 9038682 9039020 -
Pvu Pvu1g0713 Chr1 9042095 9043560 +
Gso Gso13g0178 Chr13 10515323 10519103 -
Lja Lja1g5721 Chr1 101442789 101444281 -
Tpr Tpr1g3160 Chr1 36069055 36078298 +
Tsu Tsu01g00936 Chr01 8571797 8578435 +
Pvu Pvu1g0714 Chr1 9066956 9068047 -
Ahy Ahy16g3579 Chr16 153412828 153414972 +
Ahy Ahy6g2826 Chr6 114108823 114110967 +
Amo Amo16g3900 Chr16 150795349 150797507 +
Car Car04g02986 Chr04 57305707 57308100 -
Lja Lja1g5720 Chr1 101419801 101421949 +
Mal Mal1g5185 Chr1 124548754 124550703 +
Mepo Mepo4g00933 Chr4 12078263 12083466 +
Mtr Mtr1g0808 Chr1 9138836 9141224 -
Psa Psa6g0888 Chr6 32601981 32617958 -
Tpr Tpr1g3159 Chr1 36066576 36069998 -
Tsu Tsu01g00935 Chr01 8565794 8567745 +
Vra Vra6g1181 Chr6 20185467 20188174 +
Pvu Pvu1g0715 Chr1 9076566 9079018 +
Ahy Ahy16g3578 Chr16 153401607 153406092 -
Amo Amo16g3899 Chr16 150769226 150795064 -
Bisa Bisa05g0342 Chr05 5517444 5519701 -
Car Car04g02987 Chr04 57572535 57573345 -
Gso Gso13g0177 Chr13 10505796 10509867 -
Lja Lja1g5719 Chr1 101414376 101416249 -
Mal Mal1g5184 Chr1 124544034 124547775 -
Mtr Mtr1g0807 Chr1 9125814 9135629 -
Psa Psa6g0887 Chr6 32590698 32595350 -
Sto Sto5g1254 Chr5 8500168 8504464 -
Tpr Tpr1g3158 Chr1 36058746 36063275 +
Tsu Tsu01g00934 Chr01 8562290 8565238 -
Vimu Vimu1g02087 Chr1 29686920 29688190 +
Vivi Vivi4g04730 Chr4 176236400 176246596 +
Vra Vra6g1576 Chr6 31125164 31132992 -
Pvu Pvu1g0716 Chr1 9088698 9091228 +
Mal Mal1g5183 Chr1 124483283 124489243 -
Mtr Mtr1g0804 Chr1 9073444 9081859 -
Psa Psa6g0881 Chr6 32347356 32359336 +
Sto Sto5g1253 Chr5 8494441 8498384 -
Tpr Tpr1g3006 Chr1 34473942 34475454 +
Tsu Tsu01g00933 Chr01 8555051 8561756 +
Vra Vra6g1577 Chr6 31137002 31138108 -
Pvu Pvu1g0717 Chr1 9110844 9112834 -
Amo Amo16g3896 Chr16 150749207 150751071 +
Gso Gso19g0609 Chr19 21702037 21710169 -
Gso Gso13g0176 Chr13 10488022 10490309 +
Mtr Mtr1g0803 Chr1 9052598 9054787 -
Sto Sto5g1252 Chr5 8489164 8491546 +
Tpr Tpr1g3155 Chr1 36044171 36046161 -
Tsu Tsu01g00932 Chr01 8552583 8554475 -
Vra Vra6g1176 Chr6 20024927 20034526 +
Pvu Pvu1g0718 Chr1 9116079 9116459 +
Ahy Ahy6g2825 Chr6 114097602 114102086 -
Amo Amo16g3895 Chr16 150738634 150743144 -
Car Car04g02989 Chr04 57593141 57594044 +
Gso Gso13g0174 Chr13 10430853 10433814 -
Mal Mal1g5179 Chr1 124426687 124445184 +
Mtr Mtr1g0802 Chr1 9038198 9046891 -
Phac Phac1g01038 Chr1 9773297 9782488 +
Phco Phco2g00790 Chr2 8720398 8722167 +
Psa Psa6g0879 Chr6 32331651 32332668 +
Sto Sto5g1251 Chr5 8485086 8489333 -
Tpr Tpr1g3153 Chr1 36037877 36041315 -
Tsu Tsu01g00931 Chr01 8547412 8552354 +
Vimu Vimu1g01874 Chr1 23297232 23298093 -
Vivi Vivi4g04728 Chr4 176221164 176227074 +
Vra Vra6g1578 Chr6 31144936 31146072 -
Pvu Pvu1g0719 Chr1 9137482 9138372 +
Gso Gso13g0173 Chr13 10429979 10452755 -
Mal Mal1g5163 Chr1 124058433 124061541 -
Sto Sto5g1249 Chr5 8462958 8474172 -
Tsu Tsu01g00939 Chr01 8592031 8594424 -
Vra Vra6g1401 Chr6 27524950 27529630 -
Pvu Pvu1g0720 Chr1 9221814 9222869 +
Amo Amo16g3520 Chr16 144984793 144989246 +
Mal Mal1g5161 Chr1 124003019 124008994 -
Tpr Tpr1g3144 Chr1 35944877 35948120 -
Tsu Tsu01g00929 Chr01 8521234 8523994 +
Gso Gso19g0609 Chr19 21702037 21710169 -