Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1578 ATGTGGAGAGAGACATCATCGTTGGTGTTACTGCTACTTCTAGTGCATAAAAGCCATGCTCGTTGTCTTCCTTCTTCATGTGGCAACATCACCAACATCACTTATCCATTTCGATTAAAAGGCGACCCAGAGAAGTGCGGTGAGGAAAGTTATGAGCTTGGTTGTGAAAATAATGTTACGGTGTTGTATCTGAACTCTGCACAATTCCATGTTCAGGCTATCAACTACAACAACTACACCGTGAGAGTGGTTGACCCTGCACTTCAACACCACAACTGCTCCTCCCTTCCTCTCCGTTCTCTCTCTCGCTCCAATTTCTCTGATACTTACACTTACTCCACGGATCTATACCAAGTCGGTTTAAGAGAGTATCGTAAATGGAAATCTCTGAGTTTCGAGCATATAGTGTTTTTGAATTGTAACCATTCAGTGAGAGAGAATGAGAATTATGTGAAGACTGGAGAGTGCGTGAAGTGGGACTCAAAGGGCTATGCATATGCAGTTGGTGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGACGTAAAGCTTGTTGCTCCAACATCTTTGAGAACTTTGAATAACCATTCCTACAATTCCATGCACAGAGGATTGGCCTATGGATTTGAGATTTCATGGCTGAAACTCGCCTGTCACAAAAAATGTCCACTCTCACAAAGCAGTTGCTATTTCGACTATTCTAGGGAGAAGTTTAAATGCTTGTTTGGTATACTGGACGAGCTGATACTCGAGGCATCAAGTAAGAATATCTTATCATCTTAA 786 0.4237 MWRETSSLVLLLLLVHKSHARCLPSSCGNITNITYPFRLKGDPEKCGEESYELGCENNVTVLYLNSAQFHVQAINYNNYTVRVVDPALQHHNCSSLPLRSLSRSNFSDTYTYSTDLYQVGLREYRKWKSLSFEHIVFLNCNHSVRENENYVKTGECVKWDSKGYAYAVGGDLKAEDLEVGCDVKLVAPTSLRTLNNHSYNSMHRGLAYGFEISWLKLACHKKCPLSQSSCYFDYSREKFKCLFGILDELILEASSKNILSS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1578 261 Pfam Wall-associated receptor kinase galacturonan-binding 22 85 IPR025287 GO:0030247
Vra6g1578 261 PANTHER OS01G0690200 PROTEIN 8 232 - -
Vra6g1578 261 PANTHER OS01G0113900 PROTEIN 8 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1578 Vra-Chr6 31144936 31146072 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1578 12 241 Receptor kinase-like Gene Family AT5G38260 23.830 1.18e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1578 - - pvu:PHAVU_001G049300g 377.867