Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst8g01402 . . . . . . . . . Vivi3g03021 .
Pvu1g0702 Acco05g2757 Accr3g00279 . . . . . . . . . Apr9g0780 . . Bisa05g0900 . . Cca05g00914 Dere05g2542 . Enph7g1321 Glsi10g1221 . Gma14g01432 Gso14g1225 Gso13g0184 . . . . . . . Lasa5g02848 Lele25g0237 Lele26g0246 Lele27g1850 Lele28g0259 . . . . Mibi08g2417 . . Phco2g00781 Prci2g0382 . Pste8g01987 Pumo9g01149 Rops9g02504 Seca4g02388 Spst8g01401 . Sto5g0360 . . . Vian7g00276 . Vimu1g02361 Viun8g01032 Vivi3g03044 Vra6g1408
Pvu1g0703 . . . . Aev07g1705 . . . . . . Apr9g0781 . . . . . Cca05g00915 . . . . . Gma14g01429 Gso14g1223 Gso13g0182 . . . . . . . Lasa5g02845 . . . . Lja1g5824 . . . . . . Phco2g00782 . . Pste8g01986 Pumo9g01151 Rops9g02507 . Spst8g01400 . . . . . Vian7g00275 . Vimu1g02359 . . Vra6g1407
Pvu1g0704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00784 . . . . . . . . . . . . . . . . . .
Pvu1g0705 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0706 . . . . . Ahy16g3587 Ahy6g2833 Aip06g03098 . Amo16g3478 . . . . . . . . . . . . . . . Gso13g0180 . . . . . . . . . . . . Lja1g5723 Mal1g5196 . . . Mtr1g0815 . . . Psa6g0898 . . . . . . Sto5g1263 Tpr1g3165 . Tsu01g00954 . . . . . Vra6g1183
Pvu1g0707 . . . . . Ahy16g3586 Ahy6g2832 . . Amo16g3904 . . . . . . Car04g02976 . . . . . . . . . . . . . . . . . . . . . . Mal1g5195 . . . Mtr1g0813 . . . . . . . . . . Sto5g1262 Tpr1g3163 . Tsu01g00950 . . Vimu1g01889 . Vivi4g04747 .
Pvu1g0708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0709 . . . . Aev07g1690 Ahy16g3585 Ahy6g2831 Aip06g03097 . Amo16g3902 . . . . . . Car04g02980 . . . . . . . . . . . . . . . . . . . . . Lja1g5722 Mal1g5193 . . . Mtr1g0810 . . . . . . . . . . Sto5g1260 . . Tsu01g00939 . . . . . .
Pvu1g0710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0701 Chr1 8834816 8835295 -
Spst Spst8g01402 Chr8 13109189 13110482 +
Vivi Vivi3g03021 Chr3 51187580 51189263 -
Pvu Pvu1g0702 Chr1 8874861 8877522 +
Acco Acco05g2757 Chr05 42812393 42813555 -
Accr Accr3g00279 Chr3 3024807 3025961 +
Apr Apr9g0780 Chr9 14330755 14333177 +
Bisa Bisa05g0900 Chr05 15565349 15566495 +
Cca Cca05g00914 Chr05 24622673 24624903 +
Dere Dere05g2542 Chr05 35923865 35925014 -
Enph Enph7g1321 Chr7 18701855 18704953 -
Glsi Glsi10g1221 Chr10 8215281 8217129 -
Gma Gma14g01432 Chr14 30425602 30435243 -
Gso Gso14g1225 Chr14 29014554 29017527 -
Gso Gso13g0184 Chr13 10657371 10660310 -
Lasa Lasa5g02848 Chr5 512892128 512893250 -
Lele Lele25g0237 Chr25 1402750 1403893 +
Lele Lele26g0246 Chr26 1451005 1453647 +
Lele Lele27g1850 Chr27 23329621 23330764 -
Lele Lele28g0259 Chr28 1514545 1515694 +
Mibi Mibi08g2417 Chr08 41928083 41929256 -
Phco Phco2g00781 Chr2 8646190 8647341 +
Prci Prci2g0382 Chr2 2684324 2687247 +
Pste Pste8g01987 Chr8 15675713 15678088 -
Pumo Pumo9g01149 Chr9 33460732 33463467 +
Rops Rops9g02504 Chr9 46960426 46962683 +
Seca Seca4g02388 Chr4 40594870 40596936 -
Spst Spst8g01401 Chr8 13084825 13085969 -
Sto Sto5g0360 Chr5 2194306 2195445 +
Vian Vian7g00276 Chr7 8134663 8135839 -
Vimu Vimu1g02361 Chr1 34143235 34144411 -
Viun Viun8g01032 Chr8 12067340 12070060 +
Vivi Vivi3g03044 Chr3 51616636 51619298 +
Vra Vra6g1408 Chr6 27704964 27707605 -
Pvu Pvu1g0703 Chr1 8890572 8893027 +
Aev Aev07g1705 Chr07 17940983 17947149 +
Apr Apr9g0781 Chr9 14358739 14361468 -
Cca Cca05g00915 Chr05 24629021 24633996 -
Gma Gma14g01429 Chr14 30387870 30391601 +
Gso Gso14g1223 Chr14 28970121 28974208 +
Gso Gso13g0182 Chr13 10621048 10625222 +
Lasa Lasa5g02845 Chr5 512694814 512696267 +
Lja Lja1g5824 Chr1 104648028 104656623 -
Phco Phco2g00782 Chr2 8654916 8657861 +
Pste Pste8g01986 Chr8 15666139 15670626 +
Pumo Pumo9g01151 Chr9 33479304 33483276 -
Rops Rops9g02507 Chr9 47133113 47136100 -
Spst Spst8g01400 Chr8 13078038 13081245 -
Vian Vian7g00275 Chr7 8094226 8098162 -
Vimu Vimu1g02359 Chr1 34127847 34131916 -
Vra Vra6g1407 Chr6 27688578 27692729 -
Pvu Pvu1g0704 Chr1 8906563 8911013 +
Phco Phco2g00784 Chr2 8668790 8671551 +
Pvu Pvu1g0705 Chr1 8911784 8913634 -
Pvu Pvu1g0706 Chr1 8941045 8943271 -
Ahy Ahy16g3587 Chr16 153485831 153487751 +
Ahy Ahy6g2833 Chr6 114181826 114183746 +
Aip Aip06g03098 Chr06 126281176 126284515 -
Amo Amo16g3478 Chr16 144034772 144037756 -
Gso Gso13g0180 Chr13 10549954 10552110 +
Lja Lja1g5723 Chr1 101650210 101652706 -
Mal Mal1g5196 Chr1 124665893 124667836 +
Mtr Mtr1g0815 Chr1 9209284 9211538 -
Psa Psa6g0898 Chr6 33489479 33492456 +
Sto Sto5g1263 Chr5 8556038 8561371 +
Tpr Tpr1g3165 Chr1 36106230 36113415 -
Tsu Tsu01g00954 Chr01 8693913 8696126 -
Vra Vra6g1183 Chr6 20194799 20197506 +
Pvu Pvu1g0707 Chr1 8946772 8948262 +
Ahy Ahy16g3586 Chr16 153481285 153485549 -
Ahy Ahy6g2832 Chr6 114177280 114181544 -
Amo Amo16g3904 Chr16 150828123 150829155 +
Car Car04g02976 Chr04 57107948 57112539 -
Mal Mal1g5195 Chr1 124646735 124650009 +
Mtr Mtr1g0813 Chr1 9184021 9190304 +
Sto Sto5g1262 Chr5 8550654 8553881 -
Tpr Tpr1g3163 Chr1 36097811 36099012 +
Tsu Tsu01g00950 Chr01 8659851 8662271 -
Vimu Vimu1g01889 Chr1 23574783 23576130 -
Vivi Vivi4g04747 Chr4 176591207 176601628 +
Pvu Pvu1g0708 Chr1 8950731 8951432 +
Pvu Pvu1g0709 Chr1 8969072 8970833 +
Aev Aev07g1690 Chr07 17737277 17741000 -
Ahy Ahy16g3585 Chr16 153471277 153478534 +
Ahy Ahy6g2831 Chr6 114167272 114174529 +
Aip Aip06g03097 Chr06 126276325 126280758 +
Amo Amo16g3902 Chr16 150817727 150821790 -
Car Car04g02980 Chr04 57193758 57196635 +
Lja Lja1g5722 Chr1 101645978 101649515 +
Mal Mal1g5193 Chr1 124636628 124639294 -
Mtr Mtr1g0810 Chr1 9166521 9167734 +
Sto Sto5g1260 Chr5 8536159 8541789 -
Tsu Tsu01g00939 Chr01 8592031 8594424 -
Pvu Pvu1g0710 Chr1 8980574 8981398 +
Tsu Tsu01g00939 Chr01 8592031 8594424 -
Aev Aev07g1690 Chr07 17737277 17741000 -
Vimu Vimu1g01889 Chr1 23574783 23576130 -
Lasa Lasa5g02845 Chr5 512694814 512696267 +
Lasa Lasa5g02848 Chr5 512892128 512893250 -
Seca Seca4g02388 Chr4 40594870 40596936 -