Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g1309 . . . . . . Ahy9g0714 . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g00582 . . . . . Mal5g0805 Mepo1g04087 . . Mtr8g0658 Phac10g01644 . . Psa4g3869 . . . . . . . . Trre15g00813 . . . . . Vivi7g04078 .
Pvu10g1310 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1311 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal18g1094 . . . . Lasa4g00581 . . . . . Mal5g0803 Mepo1g04088 . . Mtr8g0657 Phac10g01647 . . Psa4g3870 . . . . . . . . . . . . . . Vivi7g04077 .
Pvu10g1312 . . . . . . . . . . . Apr2g2390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g1313 . . . . . . Ahy2g0375 . . . . . . . . . . Cca11g00440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pumo7g00502 . . . . Sto1g0544 . . . . . . . . .
Pvu10g1314 . . . . . . . . . . . Apr10g0796 . . . . . . . . . . . . . Gso16g0088 . . . . . . . . . . . . . . Mepo2g00398 Mesa13g05095 . Mtr4g0389 Phac10g01650 . . Psa4g3880 . . . . . Ssu4g3100 . . Trre7g00388 . . . . . . .
Pvu10g1315 . . . Aed2g0412 . . . . . . . . . . . . . . . . . . . Gma16g00097 . . . Lal22g0514 . . Lan9g1047 . . . . . . . . . . . . . Phac10g01651 Phco1g00445 . Psa4g3881 . . . . Spst4g02117 . . Tpr5g2175 . Tsu08g00709 . . . . . Vra9g0357
Pvu10g1316 . . Adu09g00914 . . . Ahy9g0874 Aip09g01246 . Amo19g1138 . Apr10g1099 . Bach6g00424 . Bva02g02188 Car07g02990 . . . . . Gma07g00401 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu11g03114 . . .
Pvu10g1317 . . . . Aev09g0743 . . . . . . . . . . . . . . . . . . . Gso7g0378 . . . . . . . . . . . . . . . . . . . . . . . Pste6g01337 . . . . . . . . . . . . . . .
Pvu10g1318 . . . . Aev09g0744 . . . . Amo19g1137 . . . . . . . . . . . . . . . . Lal6g0569 . . Lan11g0569 . . Lapu10g00360 . . . . . Lja3g1625 . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Apr Apr2g2390 Chr2 28582943 28588050 -
Apr Apr10g0796 Chr10 19915473 19921435 -
Pvu Pvu10g1309 Chr10 39580185 39582947 -
Ahy Ahy9g0714 Chr9 10983607 10987377 -
Lasa Lasa4g00582 Chr4 21915716 21918603 +
Mal Mal5g0805 Chr5 13235610 13239459 +
Mepo Mepo1g04087 Chr1 47508412 47512646 -
Mtr Mtr8g0658 Chr8 7813295 7821704 +
Phac Phac10g01644 Chr10 39474206 39477587 -
Psa Psa4g3869 Chr4 323505722 323508943 -
Trre Trre15g00813 Chr15 5998430 6001591 +
Vivi Vivi7g04078 Chr7 107375712 107378809 +
Pvu Pvu10g1310 Chr10 39585293 39586620 -
Pvu Pvu10g1311 Chr10 39590152 39595130 -
Lal Lal18g1094 Chr18 13986334 13996704 +
Lasa Lasa4g00581 Chr4 21905948 21911830 -
Mal Mal5g0803 Chr5 13224320 13229541 +
Mepo Mepo1g04088 Chr1 47515311 47523955 -
Mtr Mtr8g0657 Chr8 7805014 7811865 +
Phac Phac10g01647 Chr10 39488528 39493611 -
Psa Psa4g3870 Chr4 323529647 323538076 +
Vivi Vivi7g04077 Chr7 107367926 107373025 +
Pvu Pvu10g1312 Chr10 39598683 39601987 -
Apr Apr2g2390 Chr2 28582943 28588050 -
Pvu Pvu10g1313 Chr10 39602702 39604042 -
Ahy Ahy2g0375 Chr2 5059510 5068361 -
Cca Cca11g00440 Chr11 6074357 6085676 -
Pumo Pumo7g00502 Chr7 8001188 8006556 -
Sto Sto1g0544 Chr1 5113517 5122992 -
Pvu Pvu10g1314 Chr10 39604295 39611322 -
Apr Apr10g0796 Chr10 19915473 19921435 -
Gso Gso16g0088 Chr16 964044 972736 -
Mepo Mepo2g00398 Chr2 4277085 4291463 +
Mesa Mesa13g05095 Chr13 81369525 81382625 -
Mtr Mtr4g0389 Chr4 4549665 4565731 +
Phac Phac10g01650 Chr10 39500724 39509116 -
Psa Psa4g3880 Chr4 324707287 324713209 -
Ssu Ssu4g3100 Chr4 78835558 78843372 +
Trre Trre7g00388 Chr7 2469411 2483602 +
Pvu Pvu10g1315 Chr10 39612752 39620438 -
Aed Aed2g0412 Chr2 2843862 2851733 -
Gma Gma16g00097 Chr16 973190 980911 -
Lal Lal22g0514 Chr22 3402721 3410364 -
Lan Lan9g1047 Chr9 17700050 17708439 +
Phac Phac10g01651 Chr10 39510263 39518011 -
Phco Phco1g00445 Chr1 3536123 3542292 -
Psa Psa4g3881 Chr4 324713982 324722712 -
Spst Spst4g02117 Chr4 61959519 61965563 +
Tpr Tpr5g2175 Chr5 42552249 42563204 +
Tsu Tsu08g00709 Chr08 7560872 7569351 -
Vra Vra9g0357 Chr9 2995149 3002823 -
Pvu Pvu10g1316 Chr10 39626988 39629334 -
Adu Adu09g00914 Chr09 14789173 14790336 -
Ahy Ahy9g0874 Chr9 15402509 15404566 -
Aip Aip09g01246 Chr09 20002993 20006572 -
Amo Amo19g1138 Chr19 21498777 21500687 +
Apr Apr10g1099 Chr10 23354882 23356563 -
Bach Bach6g00424 Chr6 3057818 3059452 -
Bva Bva02g02188 Chr02 22138852 22140478 +
Car Car07g02990 Chr07 56551403 56553027 +
Gma Gma07g00401 Chr07 3629815 3631276 -
Vimu Vimu11g03114 Chr11 50615596 50618510 -
Pvu Pvu10g1317 Chr10 39633497 39634456 +
Aev Aev09g0743 Chr09 6961189 6974768 +
Gso Gso7g0378 Chr7 3573652 3575030 +
Pste Pste6g01337 Chr6 5753811 5754761 +
Pvu Pvu10g1318 Chr10 39634790 39635958 -
Aev Aev09g0744 Chr09 6976052 6979282 -
Amo Amo19g1137 Chr19 21472277 21474184 +
Lal Lal6g0569 Chr6 3673343 3674086 -
Lan Lan11g0569 Chr11 4539017 4540586 -
Lapu Lapu10g00360 Chr10 5916998 5918310 +
Lja Lja3g1625 Chr3 17963292 17965850 -